miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 19590 0.69 0.713474
Target:  5'- cGCCAGU--UGUUcGCCgCCGAgaacauccugGCCGACu -3'
miRNA:   3'- -CGGUCGuaACAAcUGG-GGCU----------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 27564 0.69 0.713474
Target:  5'- aGCCAGCGcgGUaUGGCCaagcaccuguCCGAcauggACCGGCg -3'
miRNA:   3'- -CGGUCGUaaCA-ACUGG----------GGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 48903 0.69 0.713474
Target:  5'- cCCAGCggUGgcgGugCCgGAcACCGACa -3'
miRNA:   3'- cGGUCGuaACaa-CugGGgCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53125 0.69 0.713474
Target:  5'- gGUCAGCGUgaagcUGUUGuCgCCgGGAUCGACg -3'
miRNA:   3'- -CGGUCGUA-----ACAACuG-GGgCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 47795 0.69 0.724159
Target:  5'- cGCCAGCAccuc-GGCCgCCGGACUGGg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 55723 0.69 0.724159
Target:  5'- uGCgCGGCGgucacGUUGGCCgCCGuGCUGGCg -3'
miRNA:   3'- -CG-GUCGUaa---CAACUGG-GGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 55900 0.69 0.702708
Target:  5'- cCCAGCAggcGaUGugCCCGAAcacCCGGCc -3'
miRNA:   3'- cGGUCGUaa-CaACugGGGCUU---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 59233 0.69 0.680982
Target:  5'- cCCGGCGaucugGUUGACgaucugcugcaCCCGAgcACCGACg -3'
miRNA:   3'- cGGUCGUaa---CAACUG-----------GGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14508 0.69 0.724158
Target:  5'- cGCCGGUGgcacggUGacggUGACCCUGGccuaacugGCCGACc -3'
miRNA:   3'- -CGGUCGUa-----ACa---ACUGGGGCU--------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 48821 0.69 0.702708
Target:  5'- aCCAGCGcgGUcuUGACCUCGGccGCCGuCg -3'
miRNA:   3'- cGGUCGUaaCA--ACUGGGGCU--UGGCuG- -5'
19151 3' -53.2 NC_004684.1 + 21770 0.69 0.691874
Target:  5'- gGCCcGCAUgaugGAUCCCGAugacCCGACc -3'
miRNA:   3'- -CGGuCGUAacaaCUGGGGCUu---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9253 0.69 0.680982
Target:  5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3'
miRNA:   3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 56293 0.7 0.659069
Target:  5'- gGUCGGCGUgcucguUGUUGAgcagguagCCCGAACCGAg -3'
miRNA:   3'- -CGGUCGUA------ACAACUg-------GGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 1664 0.7 0.670043
Target:  5'- gGCCAGCuc----GACUCCcugGAACCGACg -3'
miRNA:   3'- -CGGUCGuaacaaCUGGGG---CUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 20765 0.7 0.659069
Target:  5'- uGCCguccacaccggaGGCGg---UGGCCCCGAagccACCGGCa -3'
miRNA:   3'- -CGG------------UCGUaacaACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 64192 0.7 0.626037
Target:  5'- cGUCGGCGUUGccgGugUgCCGGAUCGACa -3'
miRNA:   3'- -CGGUCGUAACaa-CugG-GGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 879 0.7 0.626037
Target:  5'- gGCCAGCAcg--UGAuCCCCGcGCCGcGCa -3'
miRNA:   3'- -CGGUCGUaacaACU-GGGGCuUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 31076 0.7 0.659069
Target:  5'- aCCGGCgaGUUGUUGGuCCaCCGggUgGACa -3'
miRNA:   3'- cGGUCG--UAACAACU-GG-GGCuuGgCUG- -5'
19151 3' -53.2 NC_004684.1 + 20635 0.71 0.604026
Target:  5'- cGCCAGCGc-GUcgagcUGACCCCaGAGguCCGGCg -3'
miRNA:   3'- -CGGUCGUaaCA-----ACUGGGG-CUU--GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 24585 0.71 0.571212
Target:  5'- gGCCAGCgaGUUGggaucaaGGCCCUGGAggcCCGGCa -3'
miRNA:   3'- -CGGUCG--UAACaa-----CUGGGGCUU---GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.