miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 40119 0.71 0.560362
Target:  5'- aGCgGGCGcUGgcGGCCUCGGcACCGACc -3'
miRNA:   3'- -CGgUCGUaACaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40613 0.68 0.755617
Target:  5'- uCCAGCAccacGUUGAUCaCCGccgcgcGGCCGACg -3'
miRNA:   3'- cGGUCGUaa--CAACUGG-GGC------UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40712 0.74 0.41744
Target:  5'- aCCAGCAggUUGacgaUGGCCCCGAggAUCGGCa -3'
miRNA:   3'- cGGUCGU--AACa---ACUGGGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 41328 0.66 0.858983
Target:  5'- cGCCGagg-UGUUGGCCUCGAACUcGCc -3'
miRNA:   3'- -CGGUcguaACAACUGGGGCUUGGcUG- -5'
19151 3' -53.2 NC_004684.1 + 41451 0.72 0.54957
Target:  5'- cGCCGGUGUcagUGgggcUGACCCCGGcgguGCUGGCc -3'
miRNA:   3'- -CGGUCGUA---ACa---ACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 44192 0.73 0.456158
Target:  5'- cGCCAGCAccucgcgguacUUGUcGACCCaGGGCCGGa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCUGGGgCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 45375 0.67 0.832233
Target:  5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3'
miRNA:   3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5'
19151 3' -53.2 NC_004684.1 + 47600 0.73 0.496728
Target:  5'- gGCCAGCAggcccgccaucUUGUcGcCCCCGGcgggcACCGGCa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCuGGGGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 47795 0.69 0.724159
Target:  5'- cGCCAGCAccuc-GGCCgCCGGACUGGg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 48821 0.69 0.702708
Target:  5'- aCCAGCGcgGUcuUGACCUCGGccGCCGuCg -3'
miRNA:   3'- cGGUCGUaaCA--ACUGGGGCU--UGGCuG- -5'
19151 3' -53.2 NC_004684.1 + 48903 0.69 0.713474
Target:  5'- cCCAGCggUGgcgGugCCgGAcACCGACa -3'
miRNA:   3'- cGGUCGuaACaa-CugGGgCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53055 0.68 0.745241
Target:  5'- cCCAGCAcgGUgGugUCCGAcucgcugguACCGGCg -3'
miRNA:   3'- cGGUCGUaaCAaCugGGGCU---------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53125 0.69 0.713474
Target:  5'- gGUCAGCGUgaagcUGUUGuCgCCgGGAUCGACg -3'
miRNA:   3'- -CGGUCGUA-----ACAACuG-GGgCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53689 0.67 0.79574
Target:  5'- gGUCGGgAUgaucuucGgcGugCCCGAACCGGCc -3'
miRNA:   3'- -CGGUCgUAa------CaaCugGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 55723 0.69 0.724159
Target:  5'- uGCgCGGCGgucacGUUGGCCgCCGuGCUGGCg -3'
miRNA:   3'- -CG-GUCGUaa---CAACUGG-GGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 55900 0.69 0.702708
Target:  5'- cCCAGCAggcGaUGugCCCGAAcacCCGGCc -3'
miRNA:   3'- cGGUCGUaa-CaACugGGGCUU---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 56293 0.7 0.659069
Target:  5'- gGUCGGCGUgcucguUGUUGAgcagguagCCCGAACCGAg -3'
miRNA:   3'- -CGGUCGUA------ACAACUg-------GGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 58428 0.67 0.822239
Target:  5'- cGCCGGUugccuccGGCCCCGuGCCGGa -3'
miRNA:   3'- -CGGUCGuaacaa-CUGGGGCuUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 59233 0.69 0.680982
Target:  5'- cCCGGCGaucugGUUGACgaucugcugcaCCCGAgcACCGACg -3'
miRNA:   3'- cGGUCGUaa---CAACUG-----------GGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 59349 0.68 0.734752
Target:  5'- uGCUGGCGcUGgagGACCgCC-AGCCGACg -3'
miRNA:   3'- -CGGUCGUaACaa-CUGG-GGcUUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.