miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 60348 0.67 0.827722
Target:  5'- cGCCAGCgcgucggacugGUUGUUGuCCuuGAucguguacugcgggaACCGAUu -3'
miRNA:   3'- -CGGUCG-----------UAACAACuGGggCU---------------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 61540 0.67 0.824075
Target:  5'- cGCUGGCGUgccgcugGUUGGUCCgGGugCGGCa -3'
miRNA:   3'- -CGGUCGUAa------CAACUGGGgCUugGCUG- -5'
19151 3' -53.2 NC_004684.1 + 61702 0.66 0.867137
Target:  5'- uGCCgugGGCAggccgGGCCCCGGccaccuCCGACc -3'
miRNA:   3'- -CGG---UCGUaacaaCUGGGGCUu-----GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 63924 0.66 0.875046
Target:  5'- -aCGGCGUUGUacGCgCCGAACUGGg -3'
miRNA:   3'- cgGUCGUAACAacUGgGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 64192 0.7 0.626037
Target:  5'- cGUCGGCGUUGccgGugUgCCGGAUCGACa -3'
miRNA:   3'- -CGGUCGUAACaa-CugG-GGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 64398 0.66 0.850592
Target:  5'- uGCaCGGCGcgGUgaUGGCCUCGAACCcguuGGCc -3'
miRNA:   3'- -CG-GUCGUaaCA--ACUGGGGCUUGG----CUG- -5'
19151 3' -53.2 NC_004684.1 + 64668 0.66 0.850592
Target:  5'- gGCCGuGCggUGUggcgcacuUGcCCCCGGcACCGGCc -3'
miRNA:   3'- -CGGU-CGuaACA--------ACuGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 65805 0.68 0.775976
Target:  5'- uGCCGuGCAccgGgcaggUGACCCgGAggcACCGGCg -3'
miRNA:   3'- -CGGU-CGUaa-Ca----ACUGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 66392 0.68 0.765866
Target:  5'- uCCGGCAUgg-UGuccuCCUCGGGCUGGCg -3'
miRNA:   3'- cGGUCGUAacaACu---GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 66700 0.66 0.858983
Target:  5'- aCCGGCGgc--UGACCUCGgGGCCGAg -3'
miRNA:   3'- cGGUCGUaacaACUGGGGC-UUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 67004 0.66 0.841971
Target:  5'- cGCCacGGCGg---UGAUCCUG-ACCGGCa -3'
miRNA:   3'- -CGG--UCGUaacaACUGGGGCuUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.