miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 48903 0.69 0.713474
Target:  5'- cCCAGCggUGgcgGugCCgGAcACCGACa -3'
miRNA:   3'- cGGUCGuaACaa-CugGGgCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 48821 0.69 0.702708
Target:  5'- aCCAGCGcgGUcuUGACCUCGGccGCCGuCg -3'
miRNA:   3'- cGGUCGUaaCA--ACUGGGGCU--UGGCuG- -5'
19151 3' -53.2 NC_004684.1 + 47795 0.69 0.724159
Target:  5'- cGCCAGCAccuc-GGCCgCCGGACUGGg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 47600 0.73 0.496728
Target:  5'- gGCCAGCAggcccgccaucUUGUcGcCCCCGGcgggcACCGGCa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCuGGGGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 45375 0.67 0.832233
Target:  5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3'
miRNA:   3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5'
19151 3' -53.2 NC_004684.1 + 44192 0.73 0.456158
Target:  5'- cGCCAGCAccucgcgguacUUGUcGACCCaGGGCCGGa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCUGGGgCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 41451 0.72 0.54957
Target:  5'- cGCCGGUGUcagUGgggcUGACCCCGGcgguGCUGGCc -3'
miRNA:   3'- -CGGUCGUA---ACa---ACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 41328 0.66 0.858983
Target:  5'- cGCCGagg-UGUUGGCCUCGAACUcGCc -3'
miRNA:   3'- -CGGUcguaACAACUGGGGCUUGGcUG- -5'
19151 3' -53.2 NC_004684.1 + 40712 0.74 0.41744
Target:  5'- aCCAGCAggUUGacgaUGGCCCCGAggAUCGGCa -3'
miRNA:   3'- cGGUCGU--AACa---ACUGGGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40613 0.68 0.755617
Target:  5'- uCCAGCAccacGUUGAUCaCCGccgcgcGGCCGACg -3'
miRNA:   3'- cGGUCGUaa--CAACUGG-GGC------UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40119 0.71 0.560362
Target:  5'- aGCgGGCGcUGgcGGCCUCGGcACCGACc -3'
miRNA:   3'- -CGgUCGUaACaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 39280 0.67 0.79574
Target:  5'- aCCAGCAa----GGCCUCGAACCGcACc -3'
miRNA:   3'- cGGUCGUaacaaCUGGGGCUUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 38776 0.67 0.830435
Target:  5'- cGUCGGCAccuggaacagguacUUGcUGAuuuCCCCG-ACCGGCa -3'
miRNA:   3'- -CGGUCGU--------------AACaACU---GGGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 38494 0.68 0.775976
Target:  5'- cGUCAGCAa----GGCCaCCGAcGCCGACg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 38246 0.66 0.850592
Target:  5'- gGCCAGCGca--UGuCCCCGgAGCUGAUc -3'
miRNA:   3'- -CGGUCGUaacaACuGGGGC-UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 37200 0.68 0.775977
Target:  5'- cGCCGGguUUGgUGGCCaCCagcucgccGCCGACg -3'
miRNA:   3'- -CGGUCguAACaACUGG-GGcu------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 36683 0.75 0.380792
Target:  5'- cGCCAGCAUcGUUGGCgugCCC--ACCGGCg -3'
miRNA:   3'- -CGGUCGUAaCAACUG---GGGcuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 34799 0.66 0.858983
Target:  5'- cGUCuGCAUUGcgGAgaaCCUGAccACCGACg -3'
miRNA:   3'- -CGGuCGUAACaaCUg--GGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 31076 0.7 0.659069
Target:  5'- aCCGGCgaGUUGUUGGuCCaCCGggUgGACa -3'
miRNA:   3'- cGGUCG--UAACAACU-GG-GGCuuGgCUG- -5'
19151 3' -53.2 NC_004684.1 + 28056 0.67 0.823158
Target:  5'- uGCCGGUg--GUcGGCCCCGGcggugugGCCGGg -3'
miRNA:   3'- -CGGUCGuaaCAaCUGGGGCU-------UGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.