miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 27564 0.69 0.713474
Target:  5'- aGCCAGCGcgGUaUGGCCaagcaccuguCCGAcauggACCGGCg -3'
miRNA:   3'- -CGGUCGUaaCA-ACUGG----------GGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 26315 0.67 0.829532
Target:  5'- gGCCAGgccgccgGGCCgCCGAuuGCCGACg -3'
miRNA:   3'- -CGGUCguaacaaCUGG-GGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 25075 0.66 0.858983
Target:  5'- gGCCGG-GUUGgUGGCCUCGAuaacCCGAa -3'
miRNA:   3'- -CGGUCgUAACaACUGGGGCUu---GGCUg -5'
19151 3' -53.2 NC_004684.1 + 24585 0.71 0.571212
Target:  5'- gGCCAGCgaGUUGggaucaaGGCCCUGGAggcCCGGCa -3'
miRNA:   3'- -CGGUCG--UAACaa-----CUGGGGCUU---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 22941 0.66 0.850592
Target:  5'- gGCCAGCGUgcucagcugGUcGACUacgccaCCGGGCCgGACg -3'
miRNA:   3'- -CGGUCGUAa--------CAaCUGG------GGCUUGG-CUG- -5'
19151 3' -53.2 NC_004684.1 + 21770 0.69 0.691874
Target:  5'- gGCCcGCAUgaugGAUCCCGAugacCCGACc -3'
miRNA:   3'- -CGGuCGUAacaaCUGGGGCUu---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 20765 0.7 0.659069
Target:  5'- uGCCguccacaccggaGGCGg---UGGCCCCGAagccACCGGCa -3'
miRNA:   3'- -CGG------------UCGUaacaACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 20635 0.71 0.604026
Target:  5'- cGCCAGCGc-GUcgagcUGACCCCaGAGguCCGGCg -3'
miRNA:   3'- -CGGUCGUaaCA-----ACUGGGG-CUU--GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 19590 0.69 0.713474
Target:  5'- cGCCAGU--UGUUcGCCgCCGAgaacauccugGCCGACu -3'
miRNA:   3'- -CGGUCGuaACAAcUGG-GGCU----------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 18433 0.66 0.858983
Target:  5'- aCCGGCGgccgacgUGGCuCCCGAGCagGACg -3'
miRNA:   3'- cGGUCGUaaca---ACUG-GGGCUUGg-CUG- -5'
19151 3' -53.2 NC_004684.1 + 18409 0.67 0.806324
Target:  5'- gGCCAGCAggGcaccgacgcgcccGCCCCGGccaccccgcccGCCGACg -3'
miRNA:   3'- -CGGUCGUaaCaac----------UGGGGCU-----------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15707 0.66 0.867137
Target:  5'- aCCGGCAUcGUgcuCCCgGAgacACCGACc -3'
miRNA:   3'- cGGUCGUAaCAacuGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15413 1.12 0.001392
Target:  5'- gGCCAGCAUUGUUGACCCCGAACCGACu -3'
miRNA:   3'- -CGGUCGUAACAACUGGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14761 0.68 0.755617
Target:  5'- uGCCGGUgaUGgcgacGugCCCGGcACCGACc -3'
miRNA:   3'- -CGGUCGuaACaa---CugGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14508 0.69 0.724158
Target:  5'- cGCCGGUGgcacggUGacggUGACCCUGGccuaacugGCCGACc -3'
miRNA:   3'- -CGGUCGUa-----ACa---ACUGGGGCU--------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 13407 0.71 0.604026
Target:  5'- aGCCGGacgUGUcGGCCCUGcucACCGACu -3'
miRNA:   3'- -CGGUCguaACAaCUGGGGCu--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 13012 0.68 0.775977
Target:  5'- uGCCcGCAUggccucGACCCCGcccCCGGCa -3'
miRNA:   3'- -CGGuCGUAacaa--CUGGGGCuu-GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 12559 0.67 0.79574
Target:  5'- uGCCAGCGUgcucGUUGACCgCCcGGUCGAa -3'
miRNA:   3'- -CGGUCGUAa---CAACUGG-GGcUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 12048 0.67 0.826813
Target:  5'- aCCAGCAggaggcggcucgccUGGCCgCCGAGCgCGACg -3'
miRNA:   3'- cGGUCGUaaca----------ACUGG-GGCUUG-GCUG- -5'
19151 3' -53.2 NC_004684.1 + 11772 0.73 0.456158
Target:  5'- uCCGGUGUgg-UGGCCCCGuggGCCGACc -3'
miRNA:   3'- cGGUCGUAacaACUGGGGCu--UGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.