Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19151 | 3' | -53.2 | NC_004684.1 | + | 31076 | 0.7 | 0.659069 |
Target: 5'- aCCGGCgaGUUGUUGGuCCaCCGggUgGACa -3' miRNA: 3'- cGGUCG--UAACAACU-GG-GGCuuGgCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 59233 | 0.69 | 0.680982 |
Target: 5'- cCCGGCGaucugGUUGACgaucugcugcaCCCGAgcACCGACg -3' miRNA: 3'- cGGUCGUaa---CAACUG-----------GGGCU--UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 48821 | 0.69 | 0.702708 |
Target: 5'- aCCAGCGcgGUcuUGACCUCGGccGCCGuCg -3' miRNA: 3'- cGGUCGUaaCA--ACUGGGGCU--UGGCuG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 55900 | 0.69 | 0.702708 |
Target: 5'- cCCAGCAggcGaUGugCCCGAAcacCCGGCc -3' miRNA: 3'- cGGUCGUaa-CaACugGGGCUU---GGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 19590 | 0.69 | 0.713474 |
Target: 5'- cGCCAGU--UGUUcGCCgCCGAgaacauccugGCCGACu -3' miRNA: 3'- -CGGUCGuaACAAcUGG-GGCU----------UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 27564 | 0.69 | 0.713474 |
Target: 5'- aGCCAGCGcgGUaUGGCCaagcaccuguCCGAcauggACCGGCg -3' miRNA: 3'- -CGGUCGUaaCA-ACUGG----------GGCU-----UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 48903 | 0.69 | 0.713474 |
Target: 5'- cCCAGCggUGgcgGugCCgGAcACCGACa -3' miRNA: 3'- cGGUCGuaACaa-CugGGgCU-UGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 53125 | 0.69 | 0.713474 |
Target: 5'- gGUCAGCGUgaagcUGUUGuCgCCgGGAUCGACg -3' miRNA: 3'- -CGGUCGUA-----ACAACuG-GGgCUUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 47795 | 0.69 | 0.724159 |
Target: 5'- cGCCAGCAccuc-GGCCgCCGGACUGGg -3' miRNA: 3'- -CGGUCGUaacaaCUGG-GGCUUGGCUg -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 55723 | 0.69 | 0.724159 |
Target: 5'- uGCgCGGCGgucacGUUGGCCgCCGuGCUGGCg -3' miRNA: 3'- -CG-GUCGUaa---CAACUGG-GGCuUGGCUG- -5' |
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19151 | 3' | -53.2 | NC_004684.1 | + | 36683 | 0.75 | 0.380792 |
Target: 5'- cGCCAGCAUcGUUGGCgugCCC--ACCGGCg -3' miRNA: 3'- -CGGUCGUAaCAACUG---GGGcuUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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