miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 53689 0.67 0.79574
Target:  5'- gGUCGGgAUgaucuucGgcGugCCCGAACCGGCc -3'
miRNA:   3'- -CGGUCgUAa------CaaCugGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 64668 0.66 0.850592
Target:  5'- gGCCGuGCggUGUggcgcacuUGcCCCCGGcACCGGCc -3'
miRNA:   3'- -CGGU-CGuaACA--------ACuGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 39280 0.67 0.79574
Target:  5'- aCCAGCAa----GGCCUCGAACCGcACc -3'
miRNA:   3'- cGGUCGUaacaaCUGGGGCUUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 56293 0.7 0.659069
Target:  5'- gGUCGGCGUgcucguUGUUGAgcagguagCCCGAACCGAg -3'
miRNA:   3'- -CGGUCGUA------ACAACUg-------GGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 64398 0.66 0.850592
Target:  5'- uGCaCGGCGcgGUgaUGGCCUCGAACCcguuGGCc -3'
miRNA:   3'- -CG-GUCGUaaCA--ACUGGGGCUUGG----CUG- -5'
19151 3' -53.2 NC_004684.1 + 9053 0.67 0.814819
Target:  5'- cGCCAGCAg----GGCCaCCGGGcgcgccaugacCCGGCg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUU-----------GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 22941 0.66 0.850592
Target:  5'- gGCCAGCGUgcucagcugGUcGACUacgccaCCGGGCCgGACg -3'
miRNA:   3'- -CGGUCGUAa--------CAaCUGG------GGCUUGG-CUG- -5'
19151 3' -53.2 NC_004684.1 + 66700 0.66 0.858983
Target:  5'- aCCGGCGgc--UGACCUCGgGGCCGAg -3'
miRNA:   3'- cGGUCGUaacaACUGGGGC-UUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 24585 0.71 0.571212
Target:  5'- gGCCAGCgaGUUGggaucaaGGCCCUGGAggcCCGGCa -3'
miRNA:   3'- -CGGUCG--UAACaa-----CUGGGGCUU---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 47600 0.73 0.496728
Target:  5'- gGCCAGCAggcccgccaucUUGUcGcCCCCGGcgggcACCGGCa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCuGGGGCU-----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 59233 0.69 0.680982
Target:  5'- cCCGGCGaucugGUUGACgaucugcugcaCCCGAgcACCGACg -3'
miRNA:   3'- cGGUCGUaa---CAACUG-----------GGGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 31076 0.7 0.659069
Target:  5'- aCCGGCgaGUUGUUGGuCCaCCGggUgGACa -3'
miRNA:   3'- cGGUCG--UAACAACU-GG-GGCuuGgCUG- -5'
19151 3' -53.2 NC_004684.1 + 40119 0.71 0.560362
Target:  5'- aGCgGGCGcUGgcGGCCUCGGcACCGACc -3'
miRNA:   3'- -CGgUCGUaACaaCUGGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 67004 0.66 0.841971
Target:  5'- cGCCacGGCGg---UGAUCCUG-ACCGGCa -3'
miRNA:   3'- -CGG--UCGUaacaACUGGGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 2579 0.66 0.841971
Target:  5'- gGCCGGUGUgcccGACCcgaCCGAguacGCCGACg -3'
miRNA:   3'- -CGGUCGUAacaaCUGG---GGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 45375 0.67 0.832233
Target:  5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3'
miRNA:   3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5'
19151 3' -53.2 NC_004684.1 + 26315 0.67 0.829532
Target:  5'- gGCCAGgccgccgGGCCgCCGAuuGCCGACg -3'
miRNA:   3'- -CGGUCguaacaaCUGG-GGCU--UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 12048 0.67 0.826813
Target:  5'- aCCAGCAggaggcggcucgccUGGCCgCCGAGCgCGACg -3'
miRNA:   3'- cGGUCGUaaca----------ACUGG-GGCUUG-GCUG- -5'
19151 3' -53.2 NC_004684.1 + 9253 0.69 0.680982
Target:  5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3'
miRNA:   3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 21770 0.69 0.691874
Target:  5'- gGCCcGCAUgaugGAUCCCGAugacCCGACc -3'
miRNA:   3'- -CGGuCGUAacaaCUGGGGCUu---GGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.