miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 41451 0.72 0.54957
Target:  5'- cGCCGGUGUcagUGgggcUGACCCCGGcgguGCUGGCc -3'
miRNA:   3'- -CGGUCGUA---ACa---ACUGGGGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 44192 0.73 0.456158
Target:  5'- cGCCAGCAccucgcgguacUUGUcGACCCaGGGCCGGa -3'
miRNA:   3'- -CGGUCGU-----------AACAaCUGGGgCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 2579 0.66 0.841971
Target:  5'- gGCCGGUGUgcccGACCcgaCCGAguacGCCGACg -3'
miRNA:   3'- -CGGUCGUAacaaCUGG---GGCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9063 0.75 0.354753
Target:  5'- aGCCAGCucacgGUgGACCCgGAcaagACCGACg -3'
miRNA:   3'- -CGGUCGuaa--CAaCUGGGgCU----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 45375 0.67 0.832233
Target:  5'- gGCCAGCAggucgaUGcUGACCagcuccaCCGGACCcuGGCg -3'
miRNA:   3'- -CGGUCGUa-----ACaACUGG-------GGCUUGG--CUG- -5'
19151 3' -53.2 NC_004684.1 + 1664 0.7 0.670043
Target:  5'- gGCCAGCuc----GACUCCcugGAACCGACg -3'
miRNA:   3'- -CGGUCGuaacaaCUGGGG---CUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 9253 0.69 0.680982
Target:  5'- cGCUGGCggUGcucauCCCCGAGCUGGCc -3'
miRNA:   3'- -CGGUCGuaACaacu-GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 21770 0.69 0.691874
Target:  5'- gGCCcGCAUgaugGAUCCCGAugacCCGACc -3'
miRNA:   3'- -CGGuCGUAacaaCUGGGGCUu---GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 58428 0.67 0.822239
Target:  5'- cGCCGGUugccuccGGCCCCGuGCCGGa -3'
miRNA:   3'- -CGGUCGuaacaa-CUGGGGCuUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 11374 0.67 0.79574
Target:  5'- uGCCGGUggUGgcguccaucgUGGCCUCGuucacGCCGACc -3'
miRNA:   3'- -CGGUCGuaACa---------ACUGGGGCu----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 61702 0.66 0.867137
Target:  5'- uGCCgugGGCAggccgGGCCCCGGccaccuCCGACc -3'
miRNA:   3'- -CGG---UCGUaacaaCUGGGGCUu-----GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 15707 0.66 0.867137
Target:  5'- aCCGGCAUcGUgcuCCCgGAgacACCGACc -3'
miRNA:   3'- cGGUCGUAaCAacuGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 63924 0.66 0.875046
Target:  5'- -aCGGCGUUGUacGCgCCGAACUGGg -3'
miRNA:   3'- cgGUCGUAACAacUGgGGCUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 1597 0.65 0.881192
Target:  5'- cGCCAGCGUgcaggagcagcaGUUccGGCaCCUGcACCGGCg -3'
miRNA:   3'- -CGGUCGUAa-----------CAA--CUG-GGGCuUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 65805 0.68 0.775976
Target:  5'- uGCCGuGCAccgGgcaggUGACCCgGAggcACCGGCg -3'
miRNA:   3'- -CGGU-CGUaa-Ca----ACUGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 38494 0.68 0.775976
Target:  5'- cGUCAGCAa----GGCCaCCGAcGCCGACg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 66392 0.68 0.765866
Target:  5'- uCCGGCAUgg-UGuccuCCUCGGGCUGGCg -3'
miRNA:   3'- cGGUCGUAacaACu---GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40613 0.68 0.755617
Target:  5'- uCCAGCAccacGUUGAUCaCCGccgcgcGGCCGACg -3'
miRNA:   3'- cGGUCGUaa--CAACUGG-GGC------UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 61540 0.67 0.824075
Target:  5'- cGCUGGCGUgccgcugGUUGGUCCgGGugCGGCa -3'
miRNA:   3'- -CGGUCGUAa------CAACUGGGgCUugGCUG- -5'
19151 3' -53.2 NC_004684.1 + 12048 0.67 0.826813
Target:  5'- aCCAGCAggaggcggcucgccUGGCCgCCGAGCgCGACg -3'
miRNA:   3'- cGGUCGUaaca----------ACUGG-GGCUUG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.