miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 3' -53.2 NC_004684.1 + 60348 0.67 0.827722
Target:  5'- cGCCAGCgcgucggacugGUUGUUGuCCuuGAucguguacugcgggaACCGAUu -3'
miRNA:   3'- -CGGUCG-----------UAACAACuGGggCU---------------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 12048 0.67 0.826813
Target:  5'- aCCAGCAggaggcggcucgccUGGCCgCCGAGCgCGACg -3'
miRNA:   3'- cGGUCGUaaca----------ACUGG-GGCUUG-GCUG- -5'
19151 3' -53.2 NC_004684.1 + 61540 0.67 0.824075
Target:  5'- cGCUGGCGUgccgcugGUUGGUCCgGGugCGGCa -3'
miRNA:   3'- -CGGUCGUAa------CAACUGGGgCUugGCUG- -5'
19151 3' -53.2 NC_004684.1 + 28056 0.67 0.823158
Target:  5'- uGCCGGUg--GUcGGCCCCGGcggugugGCCGGg -3'
miRNA:   3'- -CGGUCGuaaCAaCUGGGGCU-------UGGCUg -5'
19151 3' -53.2 NC_004684.1 + 58428 0.67 0.822239
Target:  5'- cGCCGGUugccuccGGCCCCGuGCCGGa -3'
miRNA:   3'- -CGGUCGuaacaa-CUGGGGCuUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 9053 0.67 0.814819
Target:  5'- cGCCAGCAg----GGCCaCCGGGcgcgccaugacCCGGCg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCUU-----------GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 18409 0.67 0.806324
Target:  5'- gGCCAGCAggGcaccgacgcgcccGCCCCGGccaccccgcccGCCGACg -3'
miRNA:   3'- -CGGUCGUaaCaac----------UGGGGCU-----------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53689 0.67 0.79574
Target:  5'- gGUCGGgAUgaucuucGgcGugCCCGAACCGGCc -3'
miRNA:   3'- -CGGUCgUAa------CaaCugGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 39280 0.67 0.79574
Target:  5'- aCCAGCAa----GGCCUCGAACCGcACc -3'
miRNA:   3'- cGGUCGUaacaaCUGGGGCUUGGC-UG- -5'
19151 3' -53.2 NC_004684.1 + 12559 0.67 0.79574
Target:  5'- uGCCAGCGUgcucGUUGACCgCCcGGUCGAa -3'
miRNA:   3'- -CGGUCGUAa---CAACUGG-GGcUUGGCUg -5'
19151 3' -53.2 NC_004684.1 + 11374 0.67 0.79574
Target:  5'- uGCCGGUggUGgcguccaucgUGGCCUCGuucacGCCGACc -3'
miRNA:   3'- -CGGUCGuaACa---------ACUGGGGCu----UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 37200 0.68 0.775977
Target:  5'- cGCCGGguUUGgUGGCCaCCagcucgccGCCGACg -3'
miRNA:   3'- -CGGUCguAACaACUGG-GGcu------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 13012 0.68 0.775977
Target:  5'- uGCCcGCAUggccucGACCCCGcccCCGGCa -3'
miRNA:   3'- -CGGuCGUAacaa--CUGGGGCuu-GGCUG- -5'
19151 3' -53.2 NC_004684.1 + 65805 0.68 0.775976
Target:  5'- uGCCGuGCAccgGgcaggUGACCCgGAggcACCGGCg -3'
miRNA:   3'- -CGGU-CGUaa-Ca----ACUGGGgCU---UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 38494 0.68 0.775976
Target:  5'- cGUCAGCAa----GGCCaCCGAcGCCGACg -3'
miRNA:   3'- -CGGUCGUaacaaCUGG-GGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 66392 0.68 0.765866
Target:  5'- uCCGGCAUgg-UGuccuCCUCGGGCUGGCg -3'
miRNA:   3'- cGGUCGUAacaACu---GGGGCUUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 40613 0.68 0.755617
Target:  5'- uCCAGCAccacGUUGAUCaCCGccgcgcGGCCGACg -3'
miRNA:   3'- cGGUCGUaa--CAACUGG-GGC------UUGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 14761 0.68 0.755617
Target:  5'- uGCCGGUgaUGgcgacGugCCCGGcACCGACc -3'
miRNA:   3'- -CGGUCGuaACaa---CugGGGCU-UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 53055 0.68 0.745241
Target:  5'- cCCAGCAcgGUgGugUCCGAcucgcugguACCGGCg -3'
miRNA:   3'- cGGUCGUaaCAaCugGGGCU---------UGGCUG- -5'
19151 3' -53.2 NC_004684.1 + 59349 0.68 0.734752
Target:  5'- uGCUGGCGcUGgagGACCgCC-AGCCGACg -3'
miRNA:   3'- -CGGUCGUaACaa-CUGG-GGcUUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.