miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19151 5' -51.7 NC_004684.1 + 33459 0.67 0.908915
Target:  5'- --cUCGCUGUgGucugcCUCGGCGGCGGc -3'
miRNA:   3'- cauAGCGGCAgCuu---GAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 30212 0.67 0.902295
Target:  5'- ---gCGCgCGUCGAuGCUCGGCGcgACGuGGc -3'
miRNA:   3'- cauaGCG-GCAGCU-UGAGCUGU--UGC-CC- -5'
19151 5' -51.7 NC_004684.1 + 39893 0.67 0.902295
Target:  5'- ----gGCCGUCGGugUaGuCGGCGGGu -3'
miRNA:   3'- cauagCGGCAGCUugAgCuGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 44951 0.67 0.902295
Target:  5'- -gAUCGCCGcCGcGC-CGACGGCGa- -3'
miRNA:   3'- caUAGCGGCaGCuUGaGCUGUUGCcc -5'
19151 5' -51.7 NC_004684.1 + 60551 0.67 0.89541
Target:  5'- ---gUGCCGUCGAcacccucgaACUCGAcCAGCuGGu -3'
miRNA:   3'- cauaGCGGCAGCU---------UGAGCU-GUUGcCC- -5'
19151 5' -51.7 NC_004684.1 + 43955 0.67 0.89541
Target:  5'- --cUCGCCGUCGAgGC-CGAgCAucagccgugcGCGGGc -3'
miRNA:   3'- cauAGCGGCAGCU-UGaGCU-GU----------UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 23212 0.68 0.888263
Target:  5'- ----gGCCGcCGGuggCGACGGCGGGu -3'
miRNA:   3'- cauagCGGCaGCUugaGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 46580 0.68 0.880858
Target:  5'- --uUC-CCaGUCGcGCUCGACGGCGGc -3'
miRNA:   3'- cauAGcGG-CAGCuUGAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 43428 0.68 0.880858
Target:  5'- ----aGCCGUcCGGguuguacagGCUCGGCAGgCGGGu -3'
miRNA:   3'- cauagCGGCA-GCU---------UGAGCUGUU-GCCC- -5'
19151 5' -51.7 NC_004684.1 + 2580 0.68 0.880858
Target:  5'- -cAUgGCCcaCGAACUCGACAGCa-- -3'
miRNA:   3'- caUAgCGGcaGCUUGAGCUGUUGccc -5'
19151 5' -51.7 NC_004684.1 + 50811 0.68 0.8732
Target:  5'- ----aGUCGUCGcGCUUGGCccAGCGGGu -3'
miRNA:   3'- cauagCGGCAGCuUGAGCUG--UUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 48940 0.68 0.865297
Target:  5'- --cUCGUCGcCGAACggcacgUCGGCGgGCGGGg -3'
miRNA:   3'- cauAGCGGCaGCUUG------AGCUGU-UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 32188 0.68 0.865297
Target:  5'- --cUCGCCGUCGuuccAGCagaUCGGCAcgucCGGGa -3'
miRNA:   3'- cauAGCGGCAGC----UUG---AGCUGUu---GCCC- -5'
19151 5' -51.7 NC_004684.1 + 51928 0.68 0.865297
Target:  5'- ---cCGuuGUCGAGUUCGACGgcgauaccuGCGGGc -3'
miRNA:   3'- cauaGCggCAGCUUGAGCUGU---------UGCCC- -5'
19151 5' -51.7 NC_004684.1 + 48569 0.68 0.865297
Target:  5'- ---cUGCgCGcCGAGCUUGACGAUGGa -3'
miRNA:   3'- cauaGCG-GCaGCUUGAGCUGUUGCCc -5'
19151 5' -51.7 NC_004684.1 + 42222 0.68 0.865297
Target:  5'- -cGUgGCCGcCGGugUCGGCAcCGGc -3'
miRNA:   3'- caUAgCGGCaGCUugAGCUGUuGCCc -5'
19151 5' -51.7 NC_004684.1 + 54580 0.68 0.857154
Target:  5'- ---cCGCCGuccUCGGGCgcgUCGuCGGCGGGg -3'
miRNA:   3'- cauaGCGGC---AGCUUG---AGCuGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 11829 0.68 0.856326
Target:  5'- ---cCGCUGUCcGGCgacuggcgcgacuUCGGCAACGGGu -3'
miRNA:   3'- cauaGCGGCAGcUUG-------------AGCUGUUGCCC- -5'
19151 5' -51.7 NC_004684.1 + 36974 0.69 0.840179
Target:  5'- ---cCGCCGUCGAACagguguugccaCGGCAGCgccGGGa -3'
miRNA:   3'- cauaGCGGCAGCUUGa----------GCUGUUG---CCC- -5'
19151 5' -51.7 NC_004684.1 + 39480 0.69 0.822342
Target:  5'- gGUGUCGCCcagGAACUCGcGCAGgcCGGGc -3'
miRNA:   3'- -CAUAGCGGcagCUUGAGC-UGUU--GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.