miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19152 5' -60.8 NC_004684.1 + 44324 0.66 0.509467
Target:  5'- aGGCGUCGaaccgguUGGCCAGCuuGGCcaGGCcgucACCa -3'
miRNA:   3'- gUUGCAGC-------ACCGGUCG--CCG--CCG----UGGc -5'
19152 5' -60.8 NC_004684.1 + 39306 0.66 0.500578
Target:  5'- cCggUG-CG-GGUCGcGCGGCGGC-CCGg -3'
miRNA:   3'- -GuuGCaGCaCCGGU-CGCCGCCGuGGC- -5'
19152 5' -60.8 NC_004684.1 + 49328 0.66 0.500578
Target:  5'- --cCGUCGgcGGCCA-UGGuCGGCGCUGa -3'
miRNA:   3'- guuGCAGCa-CCGGUcGCC-GCCGUGGC- -5'
19152 5' -60.8 NC_004684.1 + 12081 0.66 0.500578
Target:  5'- gCGACGagGUgcuGGCCcgcGCGGCGGcCAUCa -3'
miRNA:   3'- -GUUGCagCA---CCGGu--CGCCGCC-GUGGc -5'
19152 5' -60.8 NC_004684.1 + 56147 0.66 0.500578
Target:  5'- aCGAUGagCGUGGCCcuggccgacgacGGCgacgacGGCGGCGCUa -3'
miRNA:   3'- -GUUGCa-GCACCGG------------UCG------CCGCCGUGGc -5'
19152 5' -60.8 NC_004684.1 + 52146 0.66 0.500578
Target:  5'- --uUG-CGUGG-CAGCGGCGG-GCCGu -3'
miRNA:   3'- guuGCaGCACCgGUCGCCGCCgUGGC- -5'
19152 5' -60.8 NC_004684.1 + 1212 0.66 0.500578
Target:  5'- gCGGCGUCGacuucgucGGCCu-CGGCGGC-CUGg -3'
miRNA:   3'- -GUUGCAGCa-------CCGGucGCCGCCGuGGC- -5'
19152 5' -60.8 NC_004684.1 + 64447 0.66 0.500578
Target:  5'- -cGCGcCGaUGGCCucGGUGcuCGGCACCGg -3'
miRNA:   3'- guUGCaGC-ACCGG--UCGCc-GCCGUGGC- -5'
19152 5' -60.8 NC_004684.1 + 54879 0.66 0.499594
Target:  5'- ---gGUCGUGGCCcucacaacgugcGGCacgaGGCGGCccuggugGCCGa -3'
miRNA:   3'- guugCAGCACCGG------------UCG----CCGCCG-------UGGC- -5'
19152 5' -60.8 NC_004684.1 + 10793 0.66 0.490783
Target:  5'- aCGGCGUCGgcaccguagcGGCaucCGGCGGCugggccGCACCGa -3'
miRNA:   3'- -GUUGCAGCa---------CCG---GUCGCCGc-----CGUGGC- -5'
19152 5' -60.8 NC_004684.1 + 15255 0.66 0.490783
Target:  5'- -uACGUCGaUGGCCuGGCcaacacccuGGUGGcCACCa -3'
miRNA:   3'- guUGCAGC-ACCGG-UCG---------CCGCC-GUGGc -5'
19152 5' -60.8 NC_004684.1 + 66269 0.66 0.490783
Target:  5'- gCGGCGUCGUc-CCAGCGGaCGGcCACg- -3'
miRNA:   3'- -GUUGCAGCAccGGUCGCC-GCC-GUGgc -5'
19152 5' -60.8 NC_004684.1 + 17946 0.66 0.490783
Target:  5'- uCGAC-UCGUGGaucGCGGCaacGGCACCa -3'
miRNA:   3'- -GUUGcAGCACCgguCGCCG---CCGUGGc -5'
19152 5' -60.8 NC_004684.1 + 27801 0.66 0.490783
Target:  5'- -uGCGUgGUGGCCcgAGCagcuguugagGGCGGC-CUGa -3'
miRNA:   3'- guUGCAgCACCGG--UCG----------CCGCCGuGGC- -5'
19152 5' -60.8 NC_004684.1 + 43896 0.66 0.490783
Target:  5'- aCAGCGUCuuccaGGCCGGaaaGCGGuCACCa -3'
miRNA:   3'- -GUUGCAGca---CCGGUCgc-CGCC-GUGGc -5'
19152 5' -60.8 NC_004684.1 + 40988 0.66 0.490783
Target:  5'- cCAGCGc----GCCGGUGGCGGCGuuGg -3'
miRNA:   3'- -GUUGCagcacCGGUCGCCGCCGUggC- -5'
19152 5' -60.8 NC_004684.1 + 25395 0.66 0.490783
Target:  5'- gGAgGUUGUcGCCAGCGGC--CACCGc -3'
miRNA:   3'- gUUgCAGCAcCGGUCGCCGccGUGGC- -5'
19152 5' -60.8 NC_004684.1 + 49008 0.66 0.489808
Target:  5'- ---gGUCGUGcccuggaacuuGCCGGUGaugucgaGCGGCACCGc -3'
miRNA:   3'- guugCAGCAC-----------CGGUCGC-------CGCCGUGGC- -5'
19152 5' -60.8 NC_004684.1 + 60281 0.66 0.481077
Target:  5'- uGGCGguugCGUGGcCCGGUccucGGCGGCcuCCa -3'
miRNA:   3'- gUUGCa---GCACC-GGUCG----CCGCCGu-GGc -5'
19152 5' -60.8 NC_004684.1 + 8066 0.66 0.481077
Target:  5'- ---gGUCGUGGCCgAGUGGCcaaucgagGaGCGCCc -3'
miRNA:   3'- guugCAGCACCGG-UCGCCG--------C-CGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.