miRNA display CGI


Results 21 - 40 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 3' -67.3 NC_004684.1 + 8958 0.66 0.283632
Target:  5'- -gGUCCggcaCGGGGCCGGaggcaaCGGCGGgGUu -3'
miRNA:   3'- ggCGGGg---GCCUCGGCUg-----GCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 26666 0.66 0.283632
Target:  5'- aCCGCCCCCGccgcgcuGGUCGucCCGGCcacCGCc -3'
miRNA:   3'- -GGCGGGGGCc------UCGGCu-GGCCGcc-GCG- -5'
19155 3' -67.3 NC_004684.1 + 41170 0.66 0.283632
Target:  5'- cCCGCgCgCGGGGUgGaACgGGuCGGUGCu -3'
miRNA:   3'- -GGCGgGgGCCUCGgC-UGgCC-GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 30235 0.66 0.283632
Target:  5'- gCgGCCCCCGaa-CCcACCaaGGUGGCGCu -3'
miRNA:   3'- -GgCGGGGGCcucGGcUGG--CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 51255 0.66 0.283632
Target:  5'- -gGUUCuuGGuguugauGCCGauGCUGGCGGCGUa -3'
miRNA:   3'- ggCGGGggCCu------CGGC--UGGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 16006 0.66 0.283632
Target:  5'- uCCGgCUCCGGGGa----CGGUGGCGUg -3'
miRNA:   3'- -GGCgGGGGCCUCggcugGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 631 0.66 0.282991
Target:  5'- aCCGCgCCgaggucgCCGGGguGCUGuACCgGGUGGUGCg -3'
miRNA:   3'- -GGCG-GG-------GGCCU--CGGC-UGG-CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 29830 0.66 0.282991
Target:  5'- uCCaGCUCCCGGuacaccgGGUCcACCGGCGGgucauCGCc -3'
miRNA:   3'- -GG-CGGGGGCC-------UCGGcUGGCCGCC-----GCG- -5'
19155 3' -67.3 NC_004684.1 + 29433 0.66 0.282352
Target:  5'- gUGCgCCCGGAcccgcugGgCGACCGGUucgacaucgaccuGGUGCg -3'
miRNA:   3'- gGCGgGGGCCU-------CgGCUGGCCG-------------CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 66012 0.66 0.282352
Target:  5'- gCCGCCccaCCCGGAGCUGuccaccgagaagaACgGGagcuugagcgcguCGGCGUg -3'
miRNA:   3'- -GGCGG---GGGCCUCGGC-------------UGgCC-------------GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 19539 0.66 0.282352
Target:  5'- aCCGCCUCCGGuucgcgcuacguGCCGuCaGGCGG-GUc -3'
miRNA:   3'- -GGCGGGGGCCu-----------CGGCuGgCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 24111 0.66 0.281714
Target:  5'- gCCGCagCCCGGcacgccgacgcagcAGCCGuACCcGCuGCGCa -3'
miRNA:   3'- -GGCGg-GGGCC--------------UCGGC-UGGcCGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 57176 0.66 0.277278
Target:  5'- gCGCaCgCUCGGgcgcaGGCgGGCCuggaaggcGGCGGCGCg -3'
miRNA:   3'- gGCG-G-GGGCC-----UCGgCUGG--------CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 18296 0.66 0.277278
Target:  5'- gCGaCCUgUGGcaccuGCCGGuuGGCGGCGa -3'
miRNA:   3'- gGC-GGGgGCCu----CGGCUggCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 23185 0.66 0.277278
Target:  5'- uCCGgCCCUGG-GUCGACaaguaccgcgaGGUgcuGGCGCg -3'
miRNA:   3'- -GGCgGGGGCCuCGGCUGg----------CCG---CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 5072 0.66 0.277278
Target:  5'- -gGCCUCCGGcgaugagaucGCgGAggcCCGcGCGGCGCu -3'
miRNA:   3'- ggCGGGGGCCu---------CGgCU---GGC-CGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 10246 0.66 0.277278
Target:  5'- aCCGCCgCCaUGGAGgCGaACCaGCcGCGCc -3'
miRNA:   3'- -GGCGG-GG-GCCUCgGC-UGGcCGcCGCG- -5'
19155 3' -67.3 NC_004684.1 + 62468 0.66 0.277278
Target:  5'- uCCGCaggcuuaCCGGugaugguGCCGccgagGCCGGUGGCGa -3'
miRNA:   3'- -GGCGgg-----GGCCu------CGGC-----UGGCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 20234 0.66 0.277278
Target:  5'- gUGCgCCUGGcgcGCCGGuacuacuuCCGGCccGGCGCg -3'
miRNA:   3'- gGCGgGGGCCu--CGGCU--------GGCCG--CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 24943 0.66 0.277278
Target:  5'- cCCGagaauUCCUCGGuGCCGACCcGGCcaCGCu -3'
miRNA:   3'- -GGC-----GGGGGCCuCGGCUGG-CCGccGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.