miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 20608 0.66 0.782788
Target:  5'- cCGAgCGUCuaccugggcACCGGCGAGcgCCAGcGCGu -3'
miRNA:   3'- -GCU-GUAG---------UGGCCGUUCaaGGUCcCGU- -5'
19155 5' -55.3 NC_004684.1 + 55333 0.66 0.782788
Target:  5'- cCGACG--GCUGGCAGGUgagCCuGGcGCGc -3'
miRNA:   3'- -GCUGUagUGGCCGUUCAa--GGuCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 22157 0.66 0.782788
Target:  5'- uGGCAUCACCGaggaGCAccgcAGggCCAcGGCGg -3'
miRNA:   3'- gCUGUAGUGGC----CGU----UCaaGGUcCCGU- -5'
19155 5' -55.3 NC_004684.1 + 14484 0.66 0.781805
Target:  5'- gGugGUUGCCGGUAccacgccGGUcgCCGGuGGCAc -3'
miRNA:   3'- gCugUAGUGGCCGU-------UCAa-GGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 49040 0.66 0.772893
Target:  5'- gCGGCAccgcgcCGCCGGUcGGcUCCGgGGGCGg -3'
miRNA:   3'- -GCUGUa-----GUGGCCGuUCaAGGU-CCCGU- -5'
19155 5' -55.3 NC_004684.1 + 4777 0.66 0.772893
Target:  5'- -cGCGUCGCCaGCAAGcgCCucGGCGc -3'
miRNA:   3'- gcUGUAGUGGcCGUUCaaGGucCCGU- -5'
19155 5' -55.3 NC_004684.1 + 8949 0.66 0.772893
Target:  5'- gGGCAgUCGgguCCGGCAcGGggCCGGaGGCAa -3'
miRNA:   3'- gCUGU-AGU---GGCCGU-UCaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 15980 0.66 0.766887
Target:  5'- cCGugA-CACCGGCAgaggccgaaacguccGGcUCCGGGGaCGg -3'
miRNA:   3'- -GCugUaGUGGCCGU---------------UCaAGGUCCC-GU- -5'
19155 5' -55.3 NC_004684.1 + 6604 0.66 0.762855
Target:  5'- uCGACAcuucgcUCACCGGaaccGGccuggCCAGGGCc -3'
miRNA:   3'- -GCUGU------AGUGGCCgu--UCaa---GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 9046 0.66 0.752687
Target:  5'- gCGGCAaCGCCaGCAGGgccaCCGGGcGCGc -3'
miRNA:   3'- -GCUGUaGUGGcCGUUCaa--GGUCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 54482 0.66 0.742397
Target:  5'- cCGACGgcgCACCGGCAccg-CUGGcGGCGa -3'
miRNA:   3'- -GCUGUa--GUGGCCGUucaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 24021 0.66 0.742397
Target:  5'- gGGCAUUuCCGGgGagaagaucacgcAGUUCgAGGGCGa -3'
miRNA:   3'- gCUGUAGuGGCCgU------------UCAAGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 24020 0.66 0.742397
Target:  5'- aCGugAUCGguuCCGGCAAGgugCCcGGcGCGg -3'
miRNA:   3'- -GCugUAGU---GGCCGUUCaa-GGuCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 49662 0.66 0.731999
Target:  5'- aCGGCGUgGacucggcccauUCGGCGauaacGGUgUCCAGGGCAc -3'
miRNA:   3'- -GCUGUAgU-----------GGCCGU-----UCA-AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 57543 0.66 0.731999
Target:  5'- gCGGCAgcUCACCGGCGgcGGUgaUCgAcGGCAa -3'
miRNA:   3'- -GCUGU--AGUGGCCGU--UCA--AGgUcCCGU- -5'
19155 5' -55.3 NC_004684.1 + 65801 0.66 0.731999
Target:  5'- cCGAUgccgugCACCgGGCAGGUgacCCGGaGGCAc -3'
miRNA:   3'- -GCUGua----GUGG-CCGUUCAa--GGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 32193 0.67 0.721502
Target:  5'- gGugGaCACCGGCAcccAGUUCCAcuGCAc -3'
miRNA:   3'- gCugUaGUGGCCGU---UCAAGGUccCGU- -5'
19155 5' -55.3 NC_004684.1 + 55792 0.67 0.721502
Target:  5'- gCGGCGUgACCGGguGG-UCCGGuGaGCGc -3'
miRNA:   3'- -GCUGUAgUGGCCguUCaAGGUC-C-CGU- -5'
19155 5' -55.3 NC_004684.1 + 11091 0.67 0.710919
Target:  5'- -cACGUC-CCGGCGcg--CCAGGGCc -3'
miRNA:   3'- gcUGUAGuGGCCGUucaaGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 14553 0.67 0.710919
Target:  5'- aCGGCGUacCGCUGGaCAccuGGUgcgCCGGGGCc -3'
miRNA:   3'- -GCUGUA--GUGGCC-GU---UCAa--GGUCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.