miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 64390 0.67 0.709856
Target:  5'- cCGGCAUCAgcaUGGUgacgaAGGUgcgccgcccgccgUCCAGGGCAc -3'
miRNA:   3'- -GCUGUAGUg--GCCG-----UUCA-------------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 59487 0.67 0.689536
Target:  5'- cCGGC-UgGCUGGCGGccaCCAGGGCAc -3'
miRNA:   3'- -GCUGuAgUGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 9083 0.67 0.689536
Target:  5'- cCGGCGUCGCCGGUGAGcugucaucaCCAGGu-- -3'
miRNA:   3'- -GCUGUAGUGGCCGUUCaa-------GGUCCcgu -5'
19155 5' -55.3 NC_004684.1 + 11091 0.67 0.710919
Target:  5'- -cACGUC-CCGGCGcg--CCAGGGCc -3'
miRNA:   3'- gcUGUAGuGGCCGUucaaGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 23199 0.67 0.667936
Target:  5'- cCGACAUCACCaaGGCcg---CCGGuGGCGa -3'
miRNA:   3'- -GCUGUAGUGG--CCGuucaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 959 0.67 0.689536
Target:  5'- gGGCcugcggGUCAUUGGCGAc-UCCGGGGCGu -3'
miRNA:   3'- gCUG------UAGUGGCCGUUcaAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 18017 0.68 0.633137
Target:  5'- gCGGCAaCAUCGGCAAGgccauggacagCCuGGGCc -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCaa---------GGuCCCGu -5'
19155 5' -55.3 NC_004684.1 + 52278 0.68 0.635315
Target:  5'- -aGCGUCccggugaCGGCAAGgucggccUCCAGGGCGg -3'
miRNA:   3'- gcUGUAGug-----GCCGUUCa------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 1061 0.68 0.635315
Target:  5'- cCGGCGUCACCGGgAcGUUCgAGcGCu -3'
miRNA:   3'- -GCUGUAGUGGCCgUuCAAGgUCcCGu -5'
19155 5' -55.3 NC_004684.1 + 10079 0.68 0.657082
Target:  5'- aCGGCcaGUCgACCgGGCAGGgcuggCCGGGGUg -3'
miRNA:   3'- -GCUG--UAG-UGG-CCGUUCaa---GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 23323 0.68 0.613537
Target:  5'- gCGuCAcCACCGGCGAGcuguaCCuGGGCGa -3'
miRNA:   3'- -GCuGUaGUGGCCGUUCaa---GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 31070 0.68 0.657082
Target:  5'- -uGCggCACCGGCGAGUuguuggUCCAccGGGUg -3'
miRNA:   3'- gcUGuaGUGGCCGUUCA------AGGU--CCCGu -5'
19155 5' -55.3 NC_004684.1 + 27149 0.68 0.646205
Target:  5'- uCGACcgCcccgagACCGGCAAGUgggCC-GGGUAc -3'
miRNA:   3'- -GCUGuaG------UGGCCGUUCAa--GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 53190 0.68 0.646205
Target:  5'- cCGACcgCGCCgcuGGCcAGgaaugcgUCCAGGGUg -3'
miRNA:   3'- -GCUGuaGUGG---CCGuUCa------AGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 65874 0.68 0.61245
Target:  5'- gCGuCGUCGCCGuugagcgcggcgcGCAGGUUggccaCCAGGGCc -3'
miRNA:   3'- -GCuGUAGUGGC-------------CGUUCAA-----GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 58309 0.68 0.624423
Target:  5'- uGACAgcUCACCGGCGAcg-CCGGGuCAu -3'
miRNA:   3'- gCUGU--AGUGGCCGUUcaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 45332 0.68 0.635315
Target:  5'- aCGGCA-CACCGGCGGGggucUCCAGccacaGCGu -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCa---AGGUCc----CGU- -5'
19155 5' -55.3 NC_004684.1 + 66332 0.68 0.646205
Target:  5'- uCGaACGUC-CCGGUGAcg-CCGGGGCGg -3'
miRNA:   3'- -GC-UGUAGuGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 18654 0.69 0.574543
Target:  5'- gGACAUggccugccacaucgcCACCGGCAAGcgCuggCAGGGCc -3'
miRNA:   3'- gCUGUA---------------GUGGCCGUUCaaG---GUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 56325 0.69 0.58101
Target:  5'- aGACcgCGCUGcGCGAGUucaugUCCGGGGa- -3'
miRNA:   3'- gCUGuaGUGGC-CGUUCA-----AGGUCCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.