miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 23199 0.67 0.667936
Target:  5'- cCGACAUCACCaaGGCcg---CCGGuGGCGa -3'
miRNA:   3'- -GCUGUAGUGG--CCGuucaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 23323 0.68 0.613537
Target:  5'- gCGuCAcCACCGGCGAGcuguaCCuGGGCGa -3'
miRNA:   3'- -GCuGUaGUGGCCGUUCaa---GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 24020 0.66 0.742397
Target:  5'- aCGugAUCGguuCCGGCAAGgugCCcGGcGCGg -3'
miRNA:   3'- -GCugUAGU---GGCCGUUCaa-GGuCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 24021 0.66 0.742397
Target:  5'- gGGCAUUuCCGGgGagaagaucacgcAGUUCgAGGGCGa -3'
miRNA:   3'- gCUGUAGuGGCCgU------------UCAAGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 26032 0.73 0.356128
Target:  5'- gGACuUCACCaaGCAAGgcggCCAGGGCGg -3'
miRNA:   3'- gCUGuAGUGGc-CGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 26766 0.75 0.293476
Target:  5'- cCGACGaCuuCCGGC-AGUUCCGGGGUg -3'
miRNA:   3'- -GCUGUaGu-GGCCGuUCAAGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 27149 0.68 0.646205
Target:  5'- uCGACcgCcccgagACCGGCAAGUgggCC-GGGUAc -3'
miRNA:   3'- -GCUGuaG------UGGCCGUUCAa--GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 27895 0.72 0.408947
Target:  5'- aCGACAguuggC-CCGGCcugcgcGAGUUCCuGGGCGa -3'
miRNA:   3'- -GCUGUa----GuGGCCG------UUCAAGGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 31070 0.68 0.657082
Target:  5'- -uGCggCACCGGCGAGUuguuggUCCAccGGGUg -3'
miRNA:   3'- gcUGuaGUGGCCGUUCA------AGGU--CCCGu -5'
19155 5' -55.3 NC_004684.1 + 32193 0.67 0.721502
Target:  5'- gGugGaCACCGGCAcccAGUUCCAcuGCAc -3'
miRNA:   3'- gCugUaGUGGCCGU---UCAAGGUccCGU- -5'
19155 5' -55.3 NC_004684.1 + 36172 0.72 0.408947
Target:  5'- uGGCGUCACCGGCGucggCCAGGuCGu -3'
miRNA:   3'- gCUGUAGUGGCCGUucaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 39157 0.79 0.152705
Target:  5'- -uACGUCAaCGGCGAGUUCCGGGuGCAa -3'
miRNA:   3'- gcUGUAGUgGCCGUUCAAGGUCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 45332 0.68 0.635315
Target:  5'- aCGGCA-CACCGGCGGGggucUCCAGccacaGCGu -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCa---AGGUCc----CGU- -5'
19155 5' -55.3 NC_004684.1 + 47063 0.71 0.486448
Target:  5'- cCGACAUgC-CCGGCccauugCCAGGGCAc -3'
miRNA:   3'- -GCUGUA-GuGGCCGuucaa-GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 47628 0.67 0.70026
Target:  5'- cCGGCGggCACCGGCAggccgcgcaGGUacugcacgcUCCAGGuGCc -3'
miRNA:   3'- -GCUGUa-GUGGCCGU---------UCA---------AGGUCC-CGu -5'
19155 5' -55.3 NC_004684.1 + 48951 0.71 0.446764
Target:  5'- aCGGCAcgUCgGCgGGCGGGguggCCGGGGCGg -3'
miRNA:   3'- -GCUGU--AG-UGgCCGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 49040 0.66 0.772893
Target:  5'- gCGGCAccgcgcCGCCGGUcGGcUCCGgGGGCGg -3'
miRNA:   3'- -GCUGUa-----GUGGCCGuUCaAGGU-CCCGU- -5'
19155 5' -55.3 NC_004684.1 + 49662 0.66 0.731999
Target:  5'- aCGGCGUgGacucggcccauUCGGCGauaacGGUgUCCAGGGCAc -3'
miRNA:   3'- -GCUGUAgU-----------GGCCGU-----UCA-AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 52278 0.68 0.635315
Target:  5'- -aGCGUCccggugaCGGCAAGgucggccUCCAGGGCGg -3'
miRNA:   3'- gcUGUAGug-----GCCGUUCa------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 53190 0.68 0.646205
Target:  5'- cCGACcgCGCCgcuGGCcAGgaaugcgUCCAGGGUg -3'
miRNA:   3'- -GCUGuaGUGG---CCGuUCa------AGGUCCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.