miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 54223 0.75 0.258879
Target:  5'- cCGAgGUCgGCCaGCAGcuGUUCCAGGGCAc -3'
miRNA:   3'- -GCUgUAG-UGGcCGUU--CAAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 54300 0.71 0.486448
Target:  5'- gCGGCGUgCACCGcGCGAa--CCGGGGCGc -3'
miRNA:   3'- -GCUGUA-GUGGC-CGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 54482 0.66 0.742397
Target:  5'- cCGACGgcgCACCGGCAccg-CUGGcGGCGa -3'
miRNA:   3'- -GCUGUa--GUGGCCGUucaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 55333 0.66 0.782788
Target:  5'- cCGACG--GCUGGCAGGUgagCCuGGcGCGc -3'
miRNA:   3'- -GCUGUagUGGCCGUUCAa--GGuCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 55792 0.67 0.721502
Target:  5'- gCGGCGUgACCGGguGG-UCCGGuGaGCGc -3'
miRNA:   3'- -GCUGUAgUGGCCguUCaAGGUC-C-CGU- -5'
19155 5' -55.3 NC_004684.1 + 55862 0.7 0.538256
Target:  5'- gCGACGUCGaCGcCAAGguggCCGGGGCAu -3'
miRNA:   3'- -GCUGUAGUgGCcGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 56325 0.69 0.58101
Target:  5'- aGACcgCGCUGcGCGAGUucaugUCCGGGGa- -3'
miRNA:   3'- gCUGuaGUGGC-CGUUCA-----AGGUCCCgu -5'
19155 5' -55.3 NC_004684.1 + 57543 0.66 0.731999
Target:  5'- gCGGCAgcUCACCGGCGgcGGUgaUCgAcGGCAa -3'
miRNA:   3'- -GCUGU--AGUGGCCGU--UCA--AGgUcCCGU- -5'
19155 5' -55.3 NC_004684.1 + 58309 0.68 0.624423
Target:  5'- uGACAgcUCACCGGCGAcg-CCGGGuCAu -3'
miRNA:   3'- gCUGU--AGUGGCCGUUcaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 58997 0.7 0.517276
Target:  5'- uCGGCAUCGCCGGacugcgccAGUUCCu-GGCGu -3'
miRNA:   3'- -GCUGUAGUGGCCgu------UCAAGGucCCGU- -5'
19155 5' -55.3 NC_004684.1 + 59487 0.67 0.689536
Target:  5'- cCGGC-UgGCUGGCGGccaCCAGGGCAc -3'
miRNA:   3'- -GCUGuAgUGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 61678 0.69 0.548855
Target:  5'- aCGGCAUCugCGGCg----CgAGGGCGc -3'
miRNA:   3'- -GCUGUAGugGCCGuucaaGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 64390 0.67 0.709856
Target:  5'- cCGGCAUCAgcaUGGUgacgaAGGUgcgccgcccgccgUCCAGGGCAc -3'
miRNA:   3'- -GCUGUAGUg--GCCG-----UUCA-------------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 65111 0.71 0.476366
Target:  5'- uGGCGUCGuCCGcGuCGAGgUCCAGGGUg -3'
miRNA:   3'- gCUGUAGU-GGC-C-GUUCaAGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 65801 0.66 0.731999
Target:  5'- cCGAUgccgugCACCgGGCAGGUgacCCGGaGGCAc -3'
miRNA:   3'- -GCUGua----GUGG-CCGUUCAa--GGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 65874 0.68 0.61245
Target:  5'- gCGuCGUCGCCGuugagcgcggcgcGCAGGUUggccaCCAGGGCc -3'
miRNA:   3'- -GCuGUAGUGGC-------------CGUUCAA-----GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 66332 0.68 0.646205
Target:  5'- uCGaACGUC-CCGGUGAcg-CCGGGGCGg -3'
miRNA:   3'- -GC-UGUAGuGGCCGUUcaaGGUCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.