miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 55792 0.67 0.721502
Target:  5'- gCGGCGUgACCGGguGG-UCCGGuGaGCGc -3'
miRNA:   3'- -GCUGUAgUGGCCguUCaAGGUC-C-CGU- -5'
19155 5' -55.3 NC_004684.1 + 65874 0.68 0.61245
Target:  5'- gCGuCGUCGCCGuugagcgcggcgcGCAGGUUggccaCCAGGGCc -3'
miRNA:   3'- -GCuGUAGUGGC-------------CGUUCAA-----GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 58309 0.68 0.624423
Target:  5'- uGACAgcUCACCGGCGAcg-CCGGGuCAu -3'
miRNA:   3'- gCUGU--AGUGGCCGUUcaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 45332 0.68 0.635315
Target:  5'- aCGGCA-CACCGGCGGGggucUCCAGccacaGCGu -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCa---AGGUCc----CGU- -5'
19155 5' -55.3 NC_004684.1 + 66332 0.68 0.646205
Target:  5'- uCGaACGUC-CCGGUGAcg-CCGGGGCGg -3'
miRNA:   3'- -GC-UGUAGuGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 53190 0.68 0.646205
Target:  5'- cCGACcgCGCCgcuGGCcAGgaaugcgUCCAGGGUg -3'
miRNA:   3'- -GCUGuaGUGG---CCGuUCa------AGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 23199 0.67 0.667936
Target:  5'- cCGACAUCACCaaGGCcg---CCGGuGGCGa -3'
miRNA:   3'- -GCUGUAGUGG--CCGuucaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 959 0.67 0.689536
Target:  5'- gGGCcugcggGUCAUUGGCGAc-UCCGGGGCGu -3'
miRNA:   3'- gCUG------UAGUGGCCGUUcaAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 64390 0.67 0.709856
Target:  5'- cCGGCAUCAgcaUGGUgacgaAGGUgcgccgcccgccgUCCAGGGCAc -3'
miRNA:   3'- -GCUGUAGUg--GCCG-----UUCA-------------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 56325 0.69 0.58101
Target:  5'- aGACcgCGCUGcGCGAGUucaugUCCGGGGa- -3'
miRNA:   3'- gCUGuaGUGGC-CGUUCA-----AGGUCCCgu -5'
19155 5' -55.3 NC_004684.1 + 55862 0.7 0.538256
Target:  5'- gCGACGUCGaCGcCAAGguggCCGGGGCAu -3'
miRNA:   3'- -GCUGUAGUgGCcGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 58997 0.7 0.517276
Target:  5'- uCGGCAUCGCCGGacugcgccAGUUCCu-GGCGu -3'
miRNA:   3'- -GCUGUAGUGGCCgu------UCAAGGucCCGU- -5'
19155 5' -55.3 NC_004684.1 + 39157 0.79 0.152705
Target:  5'- -uACGUCAaCGGCGAGUUCCGGGuGCAa -3'
miRNA:   3'- gcUGUAGUgGCCGUUCAAGGUCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 54223 0.75 0.258879
Target:  5'- cCGAgGUCgGCCaGCAGcuGUUCCAGGGCAc -3'
miRNA:   3'- -GCUgUAG-UGGcCGUU--CAAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 26766 0.75 0.293476
Target:  5'- cCGACGaCuuCCGGC-AGUUCCGGGGUg -3'
miRNA:   3'- -GCUGUaGu-GGCCGuUCAAGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 26032 0.73 0.356128
Target:  5'- gGACuUCACCaaGCAAGgcggCCAGGGCGg -3'
miRNA:   3'- gCUGuAGUGGc-CGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 27895 0.72 0.408947
Target:  5'- aCGACAguuggC-CCGGCcugcgcGAGUUCCuGGGCGa -3'
miRNA:   3'- -GCUGUa----GuGGCCG------UUCAAGGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 48951 0.71 0.446764
Target:  5'- aCGGCAcgUCgGCgGGCGGGguggCCGGGGCGg -3'
miRNA:   3'- -GCUGU--AG-UGgCCGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 65111 0.71 0.476366
Target:  5'- uGGCGUCGuCCGcGuCGAGgUCCAGGGUg -3'
miRNA:   3'- gCUGUAGU-GGC-C-GUUCaAGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 47063 0.71 0.486448
Target:  5'- cCGACAUgC-CCGGCccauugCCAGGGCAc -3'
miRNA:   3'- -GCUGUA-GuGGCCGuucaa-GGUCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.