miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 26032 0.73 0.356128
Target:  5'- gGACuUCACCaaGCAAGgcggCCAGGGCGg -3'
miRNA:   3'- gCUGuAGUGGc-CGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 27895 0.72 0.408947
Target:  5'- aCGACAguuggC-CCGGCcugcgcGAGUUCCuGGGCGa -3'
miRNA:   3'- -GCUGUa----GuGGCCG------UUCAAGGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 48951 0.71 0.446764
Target:  5'- aCGGCAcgUCgGCgGGCGGGguggCCGGGGCGg -3'
miRNA:   3'- -GCUGU--AG-UGgCCGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 65111 0.71 0.476366
Target:  5'- uGGCGUCGuCCGcGuCGAGgUCCAGGGUg -3'
miRNA:   3'- gCUGUAGU-GGC-C-GUUCaAGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 58309 0.68 0.624423
Target:  5'- uGACAgcUCACCGGCGAcg-CCGGGuCAu -3'
miRNA:   3'- gCUGU--AGUGGCCGUUcaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 65874 0.68 0.61245
Target:  5'- gCGuCGUCGCCGuugagcgcggcgcGCAGGUUggccaCCAGGGCc -3'
miRNA:   3'- -GCuGUAGUGGC-------------CGUUCAA-----GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 56325 0.69 0.58101
Target:  5'- aGACcgCGCUGcGCGAGUucaugUCCGGGGa- -3'
miRNA:   3'- gCUGuaGUGGC-CGUUCA-----AGGUCCCgu -5'
19155 5' -55.3 NC_004684.1 + 55862 0.7 0.538256
Target:  5'- gCGACGUCGaCGcCAAGguggCCGGGGCAu -3'
miRNA:   3'- -GCUGUAGUgGCcGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 58997 0.7 0.517276
Target:  5'- uCGGCAUCGCCGGacugcgccAGUUCCu-GGCGu -3'
miRNA:   3'- -GCUGUAGUGGCCgu------UCAAGGucCCGU- -5'
19155 5' -55.3 NC_004684.1 + 47063 0.71 0.486448
Target:  5'- cCGACAUgC-CCGGCccauugCCAGGGCAc -3'
miRNA:   3'- -GCUGUA-GuGGCCGuucaa-GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 52278 0.68 0.635315
Target:  5'- -aGCGUCccggugaCGGCAAGgucggccUCCAGGGCGg -3'
miRNA:   3'- gcUGUAGug-----GCCGUUCa------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 18017 0.68 0.633137
Target:  5'- gCGGCAaCAUCGGCAAGgccauggacagCCuGGGCc -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCaa---------GGuCCCGu -5'
19155 5' -55.3 NC_004684.1 + 23323 0.68 0.613537
Target:  5'- gCGuCAcCACCGGCGAGcuguaCCuGGGCGa -3'
miRNA:   3'- -GCuGUaGUGGCCGUUCaa---GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 18654 0.69 0.574543
Target:  5'- gGACAUggccugccacaucgcCACCGGCAAGcgCuggCAGGGCc -3'
miRNA:   3'- gCUGUA---------------GUGGCCGUUCaaG---GUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 61678 0.69 0.548855
Target:  5'- aCGGCAUCugCGGCg----CgAGGGCGc -3'
miRNA:   3'- -GCUGUAGugGCCGuucaaGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 54300 0.71 0.486448
Target:  5'- gCGGCGUgCACCGcGCGAa--CCGGGGCGc -3'
miRNA:   3'- -GCUGUA-GUGGC-CGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 36172 0.72 0.408947
Target:  5'- uGGCGUCACCGGCGucggCCAGGuCGu -3'
miRNA:   3'- gCUGUAGUGGCCGUucaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 6825 0.72 0.408947
Target:  5'- aGACAUaccaGCUGGuCGAGUUCgAGGGUg -3'
miRNA:   3'- gCUGUAg---UGGCC-GUUCAAGgUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 6951 0.73 0.381929
Target:  5'- cCGAgGUCGaacCCGGCGAGUcguUCCAGGuGUAc -3'
miRNA:   3'- -GCUgUAGU---GGCCGUUCA---AGGUCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 4777 0.66 0.772893
Target:  5'- -cGCGUCGCCaGCAAGcgCCucGGCGc -3'
miRNA:   3'- gcUGUAGUGGcCGUUCaaGGucCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.