miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 4511 0.82 0.100826
Target:  5'- aCGGCAUgGCCGGgAuccuGUUCCGGGGCGa -3'
miRNA:   3'- -GCUGUAgUGGCCgUu---CAAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 11091 0.67 0.710919
Target:  5'- -cACGUC-CCGGCGcg--CCAGGGCc -3'
miRNA:   3'- gcUGUAGuGGCCGUucaaGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 32193 0.67 0.721502
Target:  5'- gGugGaCACCGGCAcccAGUUCCAcuGCAc -3'
miRNA:   3'- gCugUaGUGGCCGU---UCAAGGUccCGU- -5'
19155 5' -55.3 NC_004684.1 + 4777 0.66 0.772893
Target:  5'- -cGCGUCGCCaGCAAGcgCCucGGCGc -3'
miRNA:   3'- gcUGUAGUGGcCGUUCaaGGucCCGU- -5'
19155 5' -55.3 NC_004684.1 + 54300 0.71 0.486448
Target:  5'- gCGGCGUgCACCGcGCGAa--CCGGGGCGc -3'
miRNA:   3'- -GCUGUA-GUGGC-CGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 61678 0.69 0.548855
Target:  5'- aCGGCAUCugCGGCg----CgAGGGCGc -3'
miRNA:   3'- -GCUGUAGugGCCGuucaaGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 23323 0.68 0.613537
Target:  5'- gCGuCAcCACCGGCGAGcuguaCCuGGGCGa -3'
miRNA:   3'- -GCuGUaGUGGCCGUUCaa---GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 18017 0.68 0.633137
Target:  5'- gCGGCAaCAUCGGCAAGgccauggacagCCuGGGCc -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCaa---------GGuCCCGu -5'
19155 5' -55.3 NC_004684.1 + 27149 0.68 0.646205
Target:  5'- uCGACcgCcccgagACCGGCAAGUgggCC-GGGUAc -3'
miRNA:   3'- -GCUGuaG------UGGCCGUUCAa--GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 47628 0.67 0.70026
Target:  5'- cCGGCGggCACCGGCAggccgcgcaGGUacugcacgcUCCAGGuGCc -3'
miRNA:   3'- -GCUGUa-GUGGCCGU---------UCA---------AGGUCC-CGu -5'
19155 5' -55.3 NC_004684.1 + 10079 0.68 0.657082
Target:  5'- aCGGCcaGUCgACCgGGCAGGgcuggCCGGGGUg -3'
miRNA:   3'- -GCUG--UAG-UGG-CCGUUCaa---GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 1061 0.68 0.635315
Target:  5'- cCGGCGUCACCGGgAcGUUCgAGcGCu -3'
miRNA:   3'- -GCUGUAGUGGCCgUuCAAGgUCcCGu -5'
19155 5' -55.3 NC_004684.1 + 6951 0.73 0.381929
Target:  5'- cCGAgGUCGaacCCGGCGAGUcguUCCAGGuGUAc -3'
miRNA:   3'- -GCUgUAGU---GGCCGUUCA---AGGUCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 59487 0.67 0.689536
Target:  5'- cCGGC-UgGCUGGCGGccaCCAGGGCAc -3'
miRNA:   3'- -GCUGuAgUGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 6825 0.72 0.408947
Target:  5'- aGACAUaccaGCUGGuCGAGUUCgAGGGUg -3'
miRNA:   3'- gCUGUAg---UGGCC-GUUCAAGgUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 52278 0.68 0.635315
Target:  5'- -aGCGUCccggugaCGGCAAGgucggccUCCAGGGCGg -3'
miRNA:   3'- gcUGUAGug-----GCCGUUCa------AGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 9083 0.67 0.689536
Target:  5'- cCGGCGUCGCCGGUGAGcugucaucaCCAGGu-- -3'
miRNA:   3'- -GCUGUAGUGGCCGUUCaa-------GGUCCcgu -5'
19155 5' -55.3 NC_004684.1 + 14553 0.67 0.710919
Target:  5'- aCGGCGUacCGCUGGaCAccuGGUgcgCCGGGGCc -3'
miRNA:   3'- -GCUGUA--GUGGCC-GU---UCAa--GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 36172 0.72 0.408947
Target:  5'- uGGCGUCACCGGCGucggCCAGGuCGu -3'
miRNA:   3'- gCUGUAGUGGCCGUucaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 18654 0.69 0.574543
Target:  5'- gGACAUggccugccacaucgcCACCGGCAAGcgCuggCAGGGCc -3'
miRNA:   3'- gCUGUA---------------GUGGCCGUUCaaG---GUCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.