miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 5' -55.3 NC_004684.1 + 57543 0.66 0.731999
Target:  5'- gCGGCAgcUCACCGGCGgcGGUgaUCgAcGGCAa -3'
miRNA:   3'- -GCUGU--AGUGGCCGU--UCA--AGgUcCCGU- -5'
19155 5' -55.3 NC_004684.1 + 8949 0.66 0.772893
Target:  5'- gGGCAgUCGgguCCGGCAcGGggCCGGaGGCAa -3'
miRNA:   3'- gCUGU-AGU---GGCCGU-UCaaGGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 59487 0.67 0.689536
Target:  5'- cCGGC-UgGCUGGCGGccaCCAGGGCAc -3'
miRNA:   3'- -GCUGuAgUGGCCGUUcaaGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 11091 0.67 0.710919
Target:  5'- -cACGUC-CCGGCGcg--CCAGGGCc -3'
miRNA:   3'- gcUGUAGuGGCCGUucaaGGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 24021 0.66 0.742397
Target:  5'- gGGCAUUuCCGGgGagaagaucacgcAGUUCgAGGGCGa -3'
miRNA:   3'- gCUGUAGuGGCCgU------------UCAAGgUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 27149 0.68 0.646205
Target:  5'- uCGACcgCcccgagACCGGCAAGUgggCC-GGGUAc -3'
miRNA:   3'- -GCUGuaG------UGGCCGUUCAa--GGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 9083 0.67 0.689536
Target:  5'- cCGGCGUCGCCGGUGAGcugucaucaCCAGGu-- -3'
miRNA:   3'- -GCUGUAGUGGCCGUUCaa-------GGUCCcgu -5'
19155 5' -55.3 NC_004684.1 + 14484 0.66 0.781805
Target:  5'- gGugGUUGCCGGUAccacgccGGUcgCCGGuGGCAc -3'
miRNA:   3'- gCugUAGUGGCCGU-------UCAa-GGUC-CCGU- -5'
19155 5' -55.3 NC_004684.1 + 54223 0.75 0.258879
Target:  5'- cCGAgGUCgGCCaGCAGcuGUUCCAGGGCAc -3'
miRNA:   3'- -GCUgUAG-UGGcCGUU--CAAGGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 45332 0.68 0.635315
Target:  5'- aCGGCA-CACCGGCGGGggucUCCAGccacaGCGu -3'
miRNA:   3'- -GCUGUaGUGGCCGUUCa---AGGUCc----CGU- -5'
19155 5' -55.3 NC_004684.1 + 58309 0.68 0.624423
Target:  5'- uGACAgcUCACCGGCGAcg-CCGGGuCAu -3'
miRNA:   3'- gCUGU--AGUGGCCGUUcaaGGUCCcGU- -5'
19155 5' -55.3 NC_004684.1 + 65874 0.68 0.61245
Target:  5'- gCGuCGUCGCCGuugagcgcggcgcGCAGGUUggccaCCAGGGCc -3'
miRNA:   3'- -GCuGUAGUGGC-------------CGUUCAA-----GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 48951 0.71 0.446764
Target:  5'- aCGGCAcgUCgGCgGGCGGGguggCCGGGGCGg -3'
miRNA:   3'- -GCUGU--AG-UGgCCGUUCaa--GGUCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 56325 0.69 0.58101
Target:  5'- aGACcgCGCUGcGCGAGUucaugUCCGGGGa- -3'
miRNA:   3'- gCUGuaGUGGC-CGUUCA-----AGGUCCCgu -5'
19155 5' -55.3 NC_004684.1 + 24020 0.66 0.742397
Target:  5'- aCGugAUCGguuCCGGCAAGgugCCcGGcGCGg -3'
miRNA:   3'- -GCugUAGU---GGCCGUUCaa-GGuCC-CGU- -5'
19155 5' -55.3 NC_004684.1 + 6604 0.66 0.762855
Target:  5'- uCGACAcuucgcUCACCGGaaccGGccuggCCAGGGCc -3'
miRNA:   3'- -GCUGU------AGUGGCCgu--UCaa---GGUCCCGu -5'
19155 5' -55.3 NC_004684.1 + 27895 0.72 0.408947
Target:  5'- aCGACAguuggC-CCGGCcugcgcGAGUUCCuGGGCGa -3'
miRNA:   3'- -GCUGUa----GuGGCCG------UUCAAGGuCCCGU- -5'
19155 5' -55.3 NC_004684.1 + 15980 0.66 0.766887
Target:  5'- cCGugA-CACCGGCAgaggccgaaacguccGGcUCCGGGGaCGg -3'
miRNA:   3'- -GCugUaGUGGCCGU---------------UCaAGGUCCC-GU- -5'
19155 5' -55.3 NC_004684.1 + 20608 0.66 0.782788
Target:  5'- cCGAgCGUCuaccugggcACCGGCGAGcgCCAGcGCGu -3'
miRNA:   3'- -GCU-GUAG---------UGGCCGUUCaaGGUCcCGU- -5'
19155 5' -55.3 NC_004684.1 + 22157 0.66 0.782788
Target:  5'- uGGCAUCACCGaggaGCAccgcAGggCCAcGGCGg -3'
miRNA:   3'- gCUGUAGUGGC----CGU----UCaaGGUcCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.