miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19156 3' -61.7 NC_004684.1 + 2042 0.65 0.495087
Target:  5'- cUGGUGgCCcugGGgGCCGCCAUcguggccugccuggCGCUGGc -3'
miRNA:   3'- aGCCACaGG---CCgUGGCGGUG--------------GCGACC- -5'
19156 3' -61.7 NC_004684.1 + 13651 0.66 0.492193
Target:  5'- cUCGGUGUuccuggccgucgaacCCGGCACCauGCCGgacauCCGCc-- -3'
miRNA:   3'- -AGCCACA---------------GGCCGUGG--CGGU-----GGCGacc -5'
19156 3' -61.7 NC_004684.1 + 66904 0.66 0.488348
Target:  5'- gUCGuUGU-CGGUGCUGCCGaccUCGCUGGc -3'
miRNA:   3'- -AGCcACAgGCCGUGGCGGU---GGCGACC- -5'
19156 3' -61.7 NC_004684.1 + 59309 0.66 0.488348
Target:  5'- cCGGUGUCggggucgaUGGCGCUggcaaugaGCCGCacccugcuggCGCUGGa -3'
miRNA:   3'- aGCCACAG--------GCCGUGG--------CGGUG----------GCGACC- -5'
19156 3' -61.7 NC_004684.1 + 26067 0.66 0.488348
Target:  5'- gUCGGcgGUCgCGGUGCCGUaGCCcauCUGGa -3'
miRNA:   3'- -AGCCa-CAG-GCCGUGGCGgUGGc--GACC- -5'
19156 3' -61.7 NC_004684.1 + 58344 0.66 0.488347
Target:  5'- cCGGUGgcccugCUGGCGuuGCCG-CGCcGGu -3'
miRNA:   3'- aGCCACa-----GGCCGUggCGGUgGCGaCC- -5'
19156 3' -61.7 NC_004684.1 + 26119 0.66 0.488347
Target:  5'- cUCGGcgcUGUCCGaccGCACCaGCaCcUCGCUGGc -3'
miRNA:   3'- -AGCC---ACAGGC---CGUGG-CG-GuGGCGACC- -5'
19156 3' -61.7 NC_004684.1 + 67382 0.66 0.488347
Target:  5'- cCGGUGUCCGGCuccacgaCGaaaaUACCGCc-- -3'
miRNA:   3'- aGCCACAGGCCGug-----GCg---GUGGCGacc -5'
19156 3' -61.7 NC_004684.1 + 44292 0.66 0.488347
Target:  5'- aCGGcGUCgccgaacuCGGCACUguucuuGCCGCCGUUGa -3'
miRNA:   3'- aGCCaCAG--------GCCGUGG------CGGUGGCGACc -5'
19156 3' -61.7 NC_004684.1 + 59837 0.66 0.488347
Target:  5'- cCGGUGUa-GGCgaaccagaacGCCGCCACgGC-GGc -3'
miRNA:   3'- aGCCACAggCCG----------UGGCGGUGgCGaCC- -5'
19156 3' -61.7 NC_004684.1 + 6308 0.66 0.485473
Target:  5'- cCGGUGg-CGGCguugcggagacaauGCCGCCACCGg--- -3'
miRNA:   3'- aGCCACagGCCG--------------UGGCGGUGGCgacc -5'
19156 3' -61.7 NC_004684.1 + 12007 0.66 0.485473
Target:  5'- -aGGUuUCCGGCGCgauccgggccagcuUGUCACUGCUGu -3'
miRNA:   3'- agCCAcAGGCCGUG--------------GCGGUGGCGACc -5'
19156 3' -61.7 NC_004684.1 + 61071 0.66 0.485472
Target:  5'- cCGGUGg-CGGCauugucuccgcaacGCCGCCACCGg--- -3'
miRNA:   3'- aGCCACagGCCG--------------UGGCGGUGGCgacc -5'
19156 3' -61.7 NC_004684.1 + 2851 0.66 0.478796
Target:  5'- cCGGUcaCCaagGCCGCCgaGCCGCUGGg -3'
miRNA:   3'- aGCCAcaGGccgUGGCGG--UGGCGACC- -5'
19156 3' -61.7 NC_004684.1 + 42403 0.66 0.478796
Target:  5'- cCGG-GUUgGGCAggaUGCCGCC-CUGGg -3'
miRNA:   3'- aGCCaCAGgCCGUg--GCGGUGGcGACC- -5'
19156 3' -61.7 NC_004684.1 + 2268 0.66 0.478795
Target:  5'- gCGGcGgCgGGCAUUGCCGCCaGcCUGGg -3'
miRNA:   3'- aGCCaCaGgCCGUGGCGGUGG-C-GACC- -5'
19156 3' -61.7 NC_004684.1 + 27367 0.66 0.477845
Target:  5'- aUCGGc--CCGGuCugCGCCGCUaacgcagGCUGGu -3'
miRNA:   3'- -AGCCacaGGCC-GugGCGGUGG-------CGACC- -5'
19156 3' -61.7 NC_004684.1 + 14317 0.66 0.475001
Target:  5'- -aGGUGUacgCCGGUACCagcgagucggacaCCACCguGCUGGg -3'
miRNA:   3'- agCCACA---GGCCGUGGc------------GGUGG--CGACC- -5'
19156 3' -61.7 NC_004684.1 + 20291 0.66 0.469336
Target:  5'- cCGGacccccgcGUcCCGGCACCGCCguucugguGCC-CUGGc -3'
miRNA:   3'- aGCCa-------CA-GGCCGUGGCGG--------UGGcGACC- -5'
19156 3' -61.7 NC_004684.1 + 36699 0.66 0.469336
Target:  5'- gUCGGaGUCCGGguaCGUCGCCGggGGu -3'
miRNA:   3'- -AGCCaCAGGCCgugGCGGUGGCgaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.