miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19156 5' -56.4 NC_004684.1 + 27327 0.66 0.728116
Target:  5'- cAGCUuugacgacGGCGGUaucgcCGugGGCAccggcaugaugcccaAGGcCACCa -3'
miRNA:   3'- -UCGA--------CCGCCA-----GUugCCGU---------------UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 59632 0.66 0.723954
Target:  5'- cGgUGGgGGUCGGCccGGUcAGGUCcCCc -3'
miRNA:   3'- uCgACCgCCAGUUG--CCGuUCCAGuGG- -5'
19156 5' -56.4 NC_004684.1 + 24840 0.66 0.723954
Target:  5'- ---gGGCGG-CAGCGGUAGcGcCACCg -3'
miRNA:   3'- ucgaCCGCCaGUUGCCGUUcCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 67210 0.66 0.723954
Target:  5'- cGUUcGGCaGGUCAACGGUgAAGGUgaACUu -3'
miRNA:   3'- uCGA-CCG-CCAGUUGCCG-UUCCAg-UGG- -5'
19156 5' -56.4 NC_004684.1 + 46354 0.66 0.723954
Target:  5'- gAGCgUGGUGGUCGuCGuGCucGGcCAUCa -3'
miRNA:   3'- -UCG-ACCGCCAGUuGC-CGuuCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 5187 0.66 0.723954
Target:  5'- cGCUGGuUGGcCAggACGGCAAcGuGUuCGCCa -3'
miRNA:   3'- uCGACC-GCCaGU--UGCCGUU-C-CA-GUGG- -5'
19156 5' -56.4 NC_004684.1 + 40917 0.66 0.722911
Target:  5'- uGGCaUGGCGGgCAcgcugucGCGGCcAGGcgUGCCg -3'
miRNA:   3'- -UCG-ACCGCCaGU-------UGCCGuUCCa-GUGG- -5'
19156 5' -56.4 NC_004684.1 + 51924 0.66 0.716636
Target:  5'- uGGCUGGUGGUCcacucGACGcacuuacgucgcaGCAccggcuccagcagcaGGGUgGCCa -3'
miRNA:   3'- -UCGACCGCCAG-----UUGC-------------CGU---------------UCCAgUGG- -5'
19156 5' -56.4 NC_004684.1 + 26997 0.66 0.713487
Target:  5'- gAGCgcGGCGGgc-GCGGCGaucaacagccAGG-CACCg -3'
miRNA:   3'- -UCGa-CCGCCaguUGCCGU----------UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 538 0.66 0.713487
Target:  5'- uGCUGGCcagC-GCGGuCGAGGcCGCCa -3'
miRNA:   3'- uCGACCGccaGuUGCC-GUUCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 65998 0.66 0.713487
Target:  5'- cGCUGGCcaGUgCAACGGCGgccuuGGcGUCgGCCa -3'
miRNA:   3'- uCGACCGc-CA-GUUGCCGU-----UC-CAG-UGG- -5'
19156 5' -56.4 NC_004684.1 + 59774 0.66 0.713487
Target:  5'- gAGCUGGCucUCGAcCGGCcagGAGGcgaaCACCg -3'
miRNA:   3'- -UCGACCGccAGUU-GCCG---UUCCa---GUGG- -5'
19156 5' -56.4 NC_004684.1 + 23215 0.66 0.713487
Target:  5'- cGCcGGUGG-CGACGGC-GGGUU-CCu -3'
miRNA:   3'- uCGaCCGCCaGUUGCCGuUCCAGuGG- -5'
19156 5' -56.4 NC_004684.1 + 25655 0.66 0.713487
Target:  5'- gAGCggcGGCGGUaccgGGCAGGG-CGCg -3'
miRNA:   3'- -UCGa--CCGCCAguugCCGUUCCaGUGg -5'
19156 5' -56.4 NC_004684.1 + 11842 0.66 0.713487
Target:  5'- gGGCcacGGCGGcCAGCGGCGcgaguucguGGUUGuCCg -3'
miRNA:   3'- -UCGa--CCGCCaGUUGCCGUu--------CCAGU-GG- -5'
19156 5' -56.4 NC_004684.1 + 24761 0.66 0.713487
Target:  5'- uGCUGGCaGGgaaGAcCGGCAccGGGcCGCUg -3'
miRNA:   3'- uCGACCG-CCag-UU-GCCGU--UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 40161 0.66 0.713487
Target:  5'- cGGUgaucGCGGUCAGCGGCccgaugagAAGGcucuggaucgCACCg -3'
miRNA:   3'- -UCGac--CGCCAGUUGCCG--------UUCCa---------GUGG- -5'
19156 5' -56.4 NC_004684.1 + 21077 0.66 0.710331
Target:  5'- gGGCaccugGGcCGGUCAguGCGGgAAgacccgcaggucauGGUCACCc -3'
miRNA:   3'- -UCGa----CC-GCCAGU--UGCCgUU--------------CCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 40353 0.66 0.702943
Target:  5'- cGCUGGCGG-CGGCcuuGGCcuuGGGg-GCCu -3'
miRNA:   3'- uCGACCGCCaGUUG---CCGu--UCCagUGG- -5'
19156 5' -56.4 NC_004684.1 + 28172 0.66 0.702943
Target:  5'- uGGCUGGCGuG-CAACcugcGCGAGGcgCACg -3'
miRNA:   3'- -UCGACCGC-CaGUUGc---CGUUCCa-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.