miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19156 5' -56.4 NC_004684.1 + 26580 0.66 0.692334
Target:  5'- uGGCgcgcGGCGGUguGC-GCGGGuUCGCCa -3'
miRNA:   3'- -UCGa---CCGCCAguUGcCGUUCcAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 5836 0.66 0.681668
Target:  5'- aAGCUGGCGGUguucgaggacCAGgcgugcgacUGGCAggccGGGcagCACCa -3'
miRNA:   3'- -UCGACCGCCA----------GUU---------GCCGU----UCCa--GUGG- -5'
19156 5' -56.4 NC_004684.1 + 58259 0.66 0.681668
Target:  5'- cGCgccgaGGCGGUCgAACGGUAccGGUCGa- -3'
miRNA:   3'- uCGa----CCGCCAG-UUGCCGUu-CCAGUgg -5'
19156 5' -56.4 NC_004684.1 + 40353 0.66 0.702943
Target:  5'- cGCUGGCGG-CGGCcuuGGCcuuGGGg-GCCu -3'
miRNA:   3'- uCGACCGCCaGUUG---CCGu--UCCagUGG- -5'
19156 5' -56.4 NC_004684.1 + 11927 0.66 0.702943
Target:  5'- cAGCcagGGCcGUCcGCuGGCcauGGUCGCCa -3'
miRNA:   3'- -UCGa--CCGcCAGuUG-CCGuu-CCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 21077 0.66 0.710331
Target:  5'- gGGCaccugGGcCGGUCAguGCGGgAAgacccgcaggucauGGUCACCc -3'
miRNA:   3'- -UCGa----CC-GCCAGU--UGCCgUU--------------CCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 5187 0.66 0.723954
Target:  5'- cGCUGGuUGGcCAggACGGCAAcGuGUuCGCCa -3'
miRNA:   3'- uCGACC-GCCaGU--UGCCGUU-C-CA-GUGG- -5'
19156 5' -56.4 NC_004684.1 + 59774 0.66 0.713487
Target:  5'- gAGCUGGCucUCGAcCGGCcagGAGGcgaaCACCg -3'
miRNA:   3'- -UCGACCGccAGUU-GCCG---UUCCa---GUGG- -5'
19156 5' -56.4 NC_004684.1 + 53728 0.66 0.692334
Target:  5'- cGGCaUGGUgccgGGuUCGACGGCcAGGaaCACCg -3'
miRNA:   3'- -UCG-ACCG----CC-AGUUGCCGuUCCa-GUGG- -5'
19156 5' -56.4 NC_004684.1 + 2170 0.66 0.702943
Target:  5'- cGUUGaCGGUCAugGcccGCGAGGU-GCCg -3'
miRNA:   3'- uCGACcGCCAGUugC---CGUUCCAgUGG- -5'
19156 5' -56.4 NC_004684.1 + 18473 0.66 0.681668
Target:  5'- gAGCUGGUGcuGUCGGugucCGGCAccGcCACCg -3'
miRNA:   3'- -UCGACCGC--CAGUU----GCCGUucCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 24761 0.66 0.713487
Target:  5'- uGCUGGCaGGgaaGAcCGGCAccGGGcCGCUg -3'
miRNA:   3'- uCGACCG-CCag-UU-GCCGU--UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 54818 0.66 0.702943
Target:  5'- uGGCUgaguucgaccgGGCGGUCAACGaGCAcgcuGGcagcaACCa -3'
miRNA:   3'- -UCGA-----------CCGCCAGUUGC-CGUu---CCag---UGG- -5'
19156 5' -56.4 NC_004684.1 + 28172 0.66 0.702943
Target:  5'- uGGCUGGCGuG-CAACcugcGCGAGGcgCACg -3'
miRNA:   3'- -UCGACCGC-CaGUUGc---CGUUCCa-GUGg -5'
19156 5' -56.4 NC_004684.1 + 25655 0.66 0.713487
Target:  5'- gAGCggcGGCGGUaccgGGCAGGG-CGCg -3'
miRNA:   3'- -UCGa--CCGCCAguugCCGUUCCaGUGg -5'
19156 5' -56.4 NC_004684.1 + 25819 0.66 0.681668
Target:  5'- cGGgUGGCGGcCAgaACGGCAucGGcgGCCa -3'
miRNA:   3'- -UCgACCGCCaGU--UGCCGUu-CCagUGG- -5'
19156 5' -56.4 NC_004684.1 + 40705 0.66 0.681668
Target:  5'- cAGCUGgGCGG-CggUGGCcGGGaCgACCa -3'
miRNA:   3'- -UCGAC-CGCCaGuuGCCGuUCCaG-UGG- -5'
19156 5' -56.4 NC_004684.1 + 13466 0.66 0.692334
Target:  5'- cAGCUGGaggccgaggaCGG-CAACGGCAAcccCACCg -3'
miRNA:   3'- -UCGACC----------GCCaGUUGCCGUUccaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 26997 0.66 0.713487
Target:  5'- gAGCgcGGCGGgc-GCGGCGaucaacagccAGG-CACCg -3'
miRNA:   3'- -UCGa-CCGCCaguUGCCGU----------UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 29139 0.66 0.702943
Target:  5'- gAGCUGGUGGUgcCGACG-C-AGuUCGCCg -3'
miRNA:   3'- -UCGACCGCCA--GUUGCcGuUCcAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.