miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19156 5' -56.4 NC_004684.1 + 414 0.7 0.438889
Target:  5'- aAGCUgGGCgacuggcaccccgaGGUCGACGGCuGGGgcgagaucgCGCCg -3'
miRNA:   3'- -UCGA-CCG--------------CCAGUUGCCGuUCCa--------GUGG- -5'
19156 5' -56.4 NC_004684.1 + 538 0.66 0.713487
Target:  5'- uGCUGGCcagC-GCGGuCGAGGcCGCCa -3'
miRNA:   3'- uCGACCGccaGuUGCC-GUUCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 620 0.68 0.5529
Target:  5'- gGGC-GGCGaGUaccGCGcCGAGGUCGCCg -3'
miRNA:   3'- -UCGaCCGC-CAgu-UGCcGUUCCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 1574 0.68 0.562427
Target:  5'- cGCcGGUgccuccgGGUCAccugcccggugcACGGCAucGGUCGCCg -3'
miRNA:   3'- uCGaCCG-------CCAGU------------UGCCGUu-CCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 1792 0.69 0.500998
Target:  5'- cAGCU-GCGag-AAgGGCGAGGUCGCCg -3'
miRNA:   3'- -UCGAcCGCcagUUgCCGUUCCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 2079 0.7 0.490868
Target:  5'- cGCUGGCcguGGUgcACaGCGAGGcCGCCg -3'
miRNA:   3'- uCGACCG---CCAguUGcCGUUCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 2170 0.66 0.702943
Target:  5'- cGUUGaCGGUCAugGcccGCGAGGU-GCCg -3'
miRNA:   3'- uCGACcGCCAGUugC---CGUUCCAgUGG- -5'
19156 5' -56.4 NC_004684.1 + 2340 0.7 0.438889
Target:  5'- uGGC-GGCGGUCAucuccUGGgacgaccucagccaCGAGGUCGCCu -3'
miRNA:   3'- -UCGaCCGCCAGUu----GCC--------------GUUCCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 2976 0.68 0.574129
Target:  5'- uGCgGGUGGcCAACGGguuGAGGccaUCACCg -3'
miRNA:   3'- uCGaCCGCCaGUUGCCg--UUCC---AGUGG- -5'
19156 5' -56.4 NC_004684.1 + 3077 0.7 0.4709
Target:  5'- -cCUGGCGGUguucaaccaccaCGACGGCcAGGgcgCACUg -3'
miRNA:   3'- ucGACCGCCA------------GUUGCCGuUCCa--GUGG- -5'
19156 5' -56.4 NC_004684.1 + 3427 0.72 0.377942
Target:  5'- cGCUGGCcgccacaGUCAGCGGCAccacGGuguUCGCCg -3'
miRNA:   3'- uCGACCGc------CAGUUGCCGUu---CC---AGUGG- -5'
19156 5' -56.4 NC_004684.1 + 3539 0.67 0.62786
Target:  5'- -cCUGGCGGUgCAA-GGCAAGG-CAUUc -3'
miRNA:   3'- ucGACCGCCA-GUUgCCGUUCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 4022 0.76 0.191932
Target:  5'- cGGCUGGCGcGUCGGCcgcucggugcgcugGGC--GGUCACCg -3'
miRNA:   3'- -UCGACCGC-CAGUUG--------------CCGuuCCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 4797 0.69 0.542373
Target:  5'- cGGCgcGGUGGccgaccgCAACGGCAAGGUguCg -3'
miRNA:   3'- -UCGa-CCGCCa------GUUGCCGUUCCAguGg -5'
19156 5' -56.4 NC_004684.1 + 4885 0.74 0.263405
Target:  5'- ---aGGCGGcUCAgGCGGCcuGGUCGCCa -3'
miRNA:   3'- ucgaCCGCC-AGU-UGCCGuuCCAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 5187 0.66 0.723954
Target:  5'- cGCUGGuUGGcCAggACGGCAAcGuGUuCGCCa -3'
miRNA:   3'- uCGACC-GCCaGU--UGCCGUU-C-CA-GUGG- -5'
19156 5' -56.4 NC_004684.1 + 5836 0.66 0.681668
Target:  5'- aAGCUGGCGGUguucgaggacCAGgcgugcgacUGGCAggccGGGcagCACCa -3'
miRNA:   3'- -UCGACCGCCA----------GUU---------GCCGU----UCCa--GUGG- -5'
19156 5' -56.4 NC_004684.1 + 6160 0.71 0.422891
Target:  5'- cGGC-GGCGGcCAgcguGCGGCGguAGG-CACCg -3'
miRNA:   3'- -UCGaCCGCCaGU----UGCCGU--UCCaGUGG- -5'
19156 5' -56.4 NC_004684.1 + 6230 0.67 0.670957
Target:  5'- cAGCUgGGCGGccaggccuUCGACGGUGAugcagugcGcGUCGCCc -3'
miRNA:   3'- -UCGA-CCGCC--------AGUUGCCGUU--------C-CAGUGG- -5'
19156 5' -56.4 NC_004684.1 + 6833 0.68 0.563488
Target:  5'- cAGCUGGUcgaguucgaggGuGUCGACGGCAccGGG-CGCg -3'
miRNA:   3'- -UCGACCG-----------C-CAGUUGCCGU--UCCaGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.