miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19158 3' -55.2 NC_004684.1 + 12686 0.67 0.766643
Target:  5'- gGCCGACGAGGCcAUUUCCGcUGCCaucgcaGAa -3'
miRNA:   3'- -UGGCUGCUUUGuUGGGGGC-AUGGg-----CU- -5'
19158 3' -55.2 NC_004684.1 + 12785 0.67 0.766643
Target:  5'- gGCCaACGAgGACAacggcACCCCCGccgacgacgcGCCCGAg -3'
miRNA:   3'- -UGGcUGCU-UUGU-----UGGGGGCa---------UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 311 0.67 0.766643
Target:  5'- gGCCGcCGAGGcCAACgCCCGcACCgGGu -3'
miRNA:   3'- -UGGCuGCUUU-GUUGgGGGCaUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 25735 0.67 0.755661
Target:  5'- uGCCGgucaacgguguguACGgcGCGAUCCCCG-GCCUGGc -3'
miRNA:   3'- -UGGC-------------UGCuuUGUUGGGGGCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 58414 0.67 0.755661
Target:  5'- gGCCGcCGGAACcccGCcgguugccuccggCCCCGUGCCgGAc -3'
miRNA:   3'- -UGGCuGCUUUGu--UG-------------GGGGCAUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 4566 0.67 0.755661
Target:  5'- cACCGACacccggucggccuGAAAgcuCCCCCGccUGCCCGGc -3'
miRNA:   3'- -UGGCUG-------------CUUUguuGGGGGC--AUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 13870 0.67 0.746567
Target:  5'- cACCGACGAcACcgUCCUgG-GCCCGGa -3'
miRNA:   3'- -UGGCUGCUuUGuuGGGGgCaUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 23446 0.67 0.746567
Target:  5'- gGCCGAUcu-GCuGGCCUCCaUGCCCGAc -3'
miRNA:   3'- -UGGCUGcuuUG-UUGGGGGcAUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 35674 0.67 0.746567
Target:  5'- -aCGGCGAGAUcaAGCUCUCGccggACCCGGu -3'
miRNA:   3'- ugGCUGCUUUG--UUGGGGGCa---UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 4502 0.67 0.746567
Target:  5'- cCCGcCGAGcugGCGGCCaCCGUggACCCGGg -3'
miRNA:   3'- uGGCuGCUU---UGUUGGgGGCA--UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 266 0.67 0.746567
Target:  5'- gGCCGACGGcgaGGCCUUCGUgcacACCUGGc -3'
miRNA:   3'- -UGGCUGCUuugUUGGGGGCA----UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 9475 0.67 0.736358
Target:  5'- aGCUGGCG-GGCAagcGCagCCGUACCCGGu -3'
miRNA:   3'- -UGGCUGCuUUGU---UGggGGCAUGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 13102 0.67 0.736358
Target:  5'- gGCCGAUGc-GCGcACCCCCG-GCCgGGu -3'
miRNA:   3'- -UGGCUGCuuUGU-UGGGGGCaUGGgCU- -5'
19158 3' -55.2 NC_004684.1 + 17014 0.67 0.72605
Target:  5'- gGCCGACGAGAauaAGCaCCaCGccGCCCGGu -3'
miRNA:   3'- -UGGCUGCUUUg--UUGgGG-GCa-UGGGCU- -5'
19158 3' -55.2 NC_004684.1 + 39661 0.67 0.72605
Target:  5'- uACCGGCcuccGCGugCCUCGUGCUCGc -3'
miRNA:   3'- -UGGCUGcuu-UGUugGGGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 15697 0.67 0.72605
Target:  5'- cACCGACGccaccGGCAucguGCUCCCGgagACaCCGAc -3'
miRNA:   3'- -UGGCUGCu----UUGU----UGGGGGCa--UG-GGCU- -5'
19158 3' -55.2 NC_004684.1 + 4162 0.67 0.715651
Target:  5'- gGCCGACGcccGGCAacgaGCCgCCgGUGgCCGAg -3'
miRNA:   3'- -UGGCUGCu--UUGU----UGG-GGgCAUgGGCU- -5'
19158 3' -55.2 NC_004684.1 + 56368 0.68 0.705175
Target:  5'- cGCCGAUGAcguAACuGCCgCCGUGUCCGu -3'
miRNA:   3'- -UGGCUGCU---UUGuUGGgGGCAUGGGCu -5'
19158 3' -55.2 NC_004684.1 + 12415 0.68 0.705175
Target:  5'- cGCUGugGucGGCGGCCaCCCGUucACCCc- -3'
miRNA:   3'- -UGGCugCu-UUGUUGG-GGGCA--UGGGcu -5'
19158 3' -55.2 NC_004684.1 + 41021 0.68 0.684029
Target:  5'- cGCCGACGuuGCcGgUgCCGuUGCCCGAc -3'
miRNA:   3'- -UGGCUGCuuUGuUgGgGGC-AUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.