miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19159 3' -57.8 NC_004684.1 + 49692 0.66 0.654495
Target:  5'- cGGUGUccaGGGCAccgggcACGCGCuCGGcGGCG-CGg -3'
miRNA:   3'- -CCACG---UCUGU------UGCGCG-GUC-CCGCaGU- -5'
19159 3' -57.8 NC_004684.1 + 10549 0.66 0.654495
Target:  5'- uGGUGCuccacCAGCuGCGCCAGGuG-GUCGu -3'
miRNA:   3'- -CCACGucu--GUUG-CGCGGUCC-CgCAGU- -5'
19159 3' -57.8 NC_004684.1 + 32411 0.66 0.654495
Target:  5'- cGGUGCA-ACAGCaGCGgCAccucGGGCGUg- -3'
miRNA:   3'- -CCACGUcUGUUG-CGCgGU----CCCGCAgu -5'
19159 3' -57.8 NC_004684.1 + 37543 0.66 0.654495
Target:  5'- -aUGguGAcCGGCGCGUUGGGGUG-CAg -3'
miRNA:   3'- ccACguCU-GUUGCGCGGUCCCGCaGU- -5'
19159 3' -57.8 NC_004684.1 + 2142 0.66 0.653429
Target:  5'- cGUGCGuuCGGCGCGUCGGugaacucGGCGUUg -3'
miRNA:   3'- cCACGUcuGUUGCGCGGUC-------CCGCAGu -5'
19159 3' -57.8 NC_004684.1 + 43471 0.66 0.643821
Target:  5'- aGGUGCGGcgGCAGCagGUGCgGcGGGCG-CAg -3'
miRNA:   3'- -CCACGUC--UGUUG--CGCGgU-CCCGCaGU- -5'
19159 3' -57.8 NC_004684.1 + 63830 0.66 0.643821
Target:  5'- uGGUGCGGAUGGCGCGgCGcacGCuGUCGg -3'
miRNA:   3'- -CCACGUCUGUUGCGCgGUcc-CG-CAGU- -5'
19159 3' -57.8 NC_004684.1 + 51562 0.66 0.643821
Target:  5'- cGGUGUGGcgauGCcGCGCGCCAccGGGuCGcUCGg -3'
miRNA:   3'- -CCACGUC----UGuUGCGCGGU--CCC-GC-AGU- -5'
19159 3' -57.8 NC_004684.1 + 11909 0.66 0.633136
Target:  5'- cGUGCGcGGCAccacCGacaGCCAGGGcCGUCc -3'
miRNA:   3'- cCACGU-CUGUu---GCg--CGGUCCC-GCAGu -5'
19159 3' -57.8 NC_004684.1 + 8634 0.66 0.633136
Target:  5'- aGUGCAG-CcAC-CGCCAGGGCa--- -3'
miRNA:   3'- cCACGUCuGuUGcGCGGUCCCGcagu -5'
19159 3' -57.8 NC_004684.1 + 24528 0.66 0.62245
Target:  5'- cGGUGCcaucuacGGCggUGUGCCGGGccgcgauaGCGUCc -3'
miRNA:   3'- -CCACGu------CUGuuGCGCGGUCC--------CGCAGu -5'
19159 3' -57.8 NC_004684.1 + 52230 0.66 0.62245
Target:  5'- aGGUGCGuGGCGGCgGCgGCCAGcugcgcgcuGGCGUgGa -3'
miRNA:   3'- -CCACGU-CUGUUG-CG-CGGUC---------CCGCAgU- -5'
19159 3' -57.8 NC_004684.1 + 33725 0.66 0.611772
Target:  5'- uGGUGguGcACAGCGaCGCCaugcccggcgAGGG-GUCGc -3'
miRNA:   3'- -CCACguC-UGUUGC-GCGG----------UCCCgCAGU- -5'
19159 3' -57.8 NC_004684.1 + 5771 0.66 0.611772
Target:  5'- cGGUGgGGcGCAGCGCGCUAcuGCGcCAg -3'
miRNA:   3'- -CCACgUC-UGUUGCGCGGUccCGCaGU- -5'
19159 3' -57.8 NC_004684.1 + 11077 0.66 0.608572
Target:  5'- --cGCAGcGCGgucuccacgucccgGCGCGCCAGGGCc--- -3'
miRNA:   3'- ccaCGUC-UGU--------------UGCGCGGUCCCGcagu -5'
19159 3' -57.8 NC_004684.1 + 33482 0.66 0.601111
Target:  5'- cGGcUGCGGugGACGCGgCGGcGGCc--- -3'
miRNA:   3'- -CC-ACGUCugUUGCGCgGUC-CCGcagu -5'
19159 3' -57.8 NC_004684.1 + 39307 0.66 0.601111
Target:  5'- cGGUGCGGgucgcGCGGCGgcccggccacacCGCCGGGGCc--- -3'
miRNA:   3'- -CCACGUC-----UGUUGC------------GCGGUCCCGcagu -5'
19159 3' -57.8 NC_004684.1 + 25853 0.66 0.601111
Target:  5'- aGGUGgaAGGCAgagaugagcuGCgGUGCCAGGGCcUCGu -3'
miRNA:   3'- -CCACg-UCUGU----------UG-CGCGGUCCCGcAGU- -5'
19159 3' -57.8 NC_004684.1 + 12975 0.67 0.590475
Target:  5'- cGGcgGCAGGCAACaccgaGCGCCGGGcCGg-- -3'
miRNA:   3'- -CCa-CGUCUGUUG-----CGCGGUCCcGCagu -5'
19159 3' -57.8 NC_004684.1 + 46959 0.67 0.590475
Target:  5'- cGUGCacagcgccAGGCuGAUGCGCCAGGaGuCGUCc -3'
miRNA:   3'- cCACG--------UCUG-UUGCGCGGUCC-C-GCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.