miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19159 5' -58.2 NC_004684.1 + 41133 0.66 0.593604
Target:  5'- cUUGAgGCCuuCCAGGCccgCCUGGAUg- -3'
miRNA:   3'- aAGCUgCGGu-GGUUCGa--GGACCUGga -5'
19159 5' -58.2 NC_004684.1 + 31253 0.66 0.593604
Target:  5'- gUUCGACgGCCuCCGGGacaCCUGGAaCCg -3'
miRNA:   3'- -AAGCUG-CGGuGGUUCga-GGACCU-GGa -5'
19159 5' -58.2 NC_004684.1 + 12294 0.66 0.593604
Target:  5'- -aCGuACGgCACC-GGCUCCUuGGCCUg -3'
miRNA:   3'- aaGC-UGCgGUGGuUCGAGGAcCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 62313 0.66 0.582878
Target:  5'- cUUCGGggUGCCACCGGGU--CUGGAUCa -3'
miRNA:   3'- -AAGCU--GCGGUGGUUCGagGACCUGGa -5'
19159 5' -58.2 NC_004684.1 + 9403 0.66 0.582878
Target:  5'- -aCGACaGCgAUCAGGCcagCCUGGACa- -3'
miRNA:   3'- aaGCUG-CGgUGGUUCGa--GGACCUGga -5'
19159 5' -58.2 NC_004684.1 + 34215 0.66 0.582878
Target:  5'- -gUGACGaCCuuGCCGAGgUCgaGGGCCUg -3'
miRNA:   3'- aaGCUGC-GG--UGGUUCgAGgaCCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 42787 0.66 0.582878
Target:  5'- -gCGGC-CUGCCGGGcCUCCaGGGCCUu -3'
miRNA:   3'- aaGCUGcGGUGGUUC-GAGGaCCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 47281 0.66 0.572191
Target:  5'- -gUGcCGCCGCCcAGCgguggCUGGACCUu -3'
miRNA:   3'- aaGCuGCGGUGGuUCGag---GACCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 3812 0.66 0.572191
Target:  5'- -cCGccGCGCCGCgCAGGCcgaUGGACCUg -3'
miRNA:   3'- aaGC--UGCGGUG-GUUCGaggACCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 41544 0.66 0.572191
Target:  5'- gUUGAacagGCCGCCGAGCaUCUGGccGCCg -3'
miRNA:   3'- aAGCUg---CGGUGGUUCGaGGACC--UGGa -5'
19159 5' -58.2 NC_004684.1 + 51148 0.66 0.572191
Target:  5'- aUCuGCGCCGCCGA-CUCCUcGGugUg -3'
miRNA:   3'- aAGcUGCGGUGGUUcGAGGA-CCugGa -5'
19159 5' -58.2 NC_004684.1 + 38745 0.66 0.572191
Target:  5'- -aCGACGCCAaCAcGCUCggugagcaUUGGACCa -3'
miRNA:   3'- aaGCUGCGGUgGUuCGAG--------GACCUGGa -5'
19159 5' -58.2 NC_004684.1 + 28135 0.66 0.572191
Target:  5'- -cCGGCGUgGuCCAAGCaagUCCUuGGACCc -3'
miRNA:   3'- aaGCUGCGgU-GGUUCG---AGGA-CCUGGa -5'
19159 5' -58.2 NC_004684.1 + 4916 0.66 0.561551
Target:  5'- cUCGGCGgCACCAucaccGGUaagCCUgcGGACCUg -3'
miRNA:   3'- aAGCUGCgGUGGU-----UCGa--GGA--CCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 11519 0.66 0.561551
Target:  5'- -cCGGCaCCGCUcGGUgggCCUGGGCCa -3'
miRNA:   3'- aaGCUGcGGUGGuUCGa--GGACCUGGa -5'
19159 5' -58.2 NC_004684.1 + 19555 0.66 0.561551
Target:  5'- --gGGCGgUGCCAGGuCUCC-GGGCCUg -3'
miRNA:   3'- aagCUGCgGUGGUUC-GAGGaCCUGGA- -5'
19159 5' -58.2 NC_004684.1 + 42453 0.66 0.550967
Target:  5'- aUCG-CGCCGCUAcugucGUUCCUGGccACCUu -3'
miRNA:   3'- aAGCuGCGGUGGUu----CGAGGACC--UGGA- -5'
19159 5' -58.2 NC_004684.1 + 37191 0.66 0.550967
Target:  5'- aUCGACGCgCGCgGccAGCUgCUGGugUg -3'
miRNA:   3'- aAGCUGCG-GUGgU--UCGAgGACCugGa -5'
19159 5' -58.2 NC_004684.1 + 15876 0.67 0.540443
Target:  5'- -aCGugGCCGCCAgcGGC-CCUGuGcaGCCg -3'
miRNA:   3'- aaGCugCGGUGGU--UCGaGGAC-C--UGGa -5'
19159 5' -58.2 NC_004684.1 + 16718 0.67 0.540443
Target:  5'- aUUGcACGgCACCGGGCgcacgCCUGGuCCg -3'
miRNA:   3'- aAGC-UGCgGUGGUUCGa----GGACCuGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.