miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19161 5' -55 NC_004684.1 + 3568 0.65 0.805249
Target:  5'- -aGGUCGugguGCGCCacAGCGGGGAcGUggaguacgucGCGCa -3'
miRNA:   3'- caCCAGC----UGUGG--UCGCUCUU-CA----------CGCG- -5'
19161 5' -55 NC_004684.1 + 46911 0.65 0.805249
Target:  5'- -gGuGUCGAguCCGacguuGCGcuuGGggGUGCGCa -3'
miRNA:   3'- caC-CAGCUguGGU-----CGC---UCuuCACGCG- -5'
19161 5' -55 NC_004684.1 + 7782 0.65 0.805249
Target:  5'- cGUGGUCGAgCAUUggugcGCGGGAugugaccggguGGUGCGg -3'
miRNA:   3'- -CACCAGCU-GUGGu----CGCUCU-----------UCACGCg -5'
19161 5' -55 NC_004684.1 + 62645 0.65 0.805249
Target:  5'- -aGGUCGcgGCACUuGCGgcuguGGccGUGCGCg -3'
miRNA:   3'- caCCAGC--UGUGGuCGC-----UCuuCACGCG- -5'
19161 5' -55 NC_004684.1 + 9378 0.65 0.805249
Target:  5'- aUGGUCGGCcUCGGCGA--AGUaCGCc -3'
miRNA:   3'- cACCAGCUGuGGUCGCUcuUCAcGCG- -5'
19161 5' -55 NC_004684.1 + 54113 0.65 0.804307
Target:  5'- -cGGUCGACACCGcGCacaaugccuacacGAGgcG-GCGUu -3'
miRNA:   3'- caCCAGCUGUGGU-CG-------------CUCuuCaCGCG- -5'
19161 5' -55 NC_004684.1 + 65894 0.65 0.803362
Target:  5'- aGUGGUCG-CGCaacaGGCGGGccaccuccgGCGCg -3'
miRNA:   3'- -CACCAGCuGUGg---UCGCUCuuca-----CGCG- -5'
19161 5' -55 NC_004684.1 + 10276 0.66 0.798612
Target:  5'- cUGGccagCGACGCCGGUGucgcgccAGAGGUcgcccgcaccgauguGCGCg -3'
miRNA:   3'- cACCa---GCUGUGGUCGC-------UCUUCA---------------CGCG- -5'
19161 5' -55 NC_004684.1 + 56217 0.66 0.795742
Target:  5'- uGUGGgagCGGCGCaugcaGGCGGucAGccUGCGCa -3'
miRNA:   3'- -CACCa--GCUGUGg----UCGCUcuUC--ACGCG- -5'
19161 5' -55 NC_004684.1 + 56994 0.66 0.795742
Target:  5'- cGUGGUUcugcACGCUGGCGgccugguacccGGcGGUGCGCg -3'
miRNA:   3'- -CACCAGc---UGUGGUCGC-----------UCuUCACGCG- -5'
19161 5' -55 NC_004684.1 + 15160 0.66 0.794782
Target:  5'- uGUGGcaccacggccugaUCGACGCCGGgGAGAuu--CGCa -3'
miRNA:   3'- -CACC-------------AGCUGUGGUCgCUCUucacGCG- -5'
19161 5' -55 NC_004684.1 + 28869 0.66 0.786067
Target:  5'- -cGGUCGGCA-UAGUGGGAAcaccgaacgGCGCg -3'
miRNA:   3'- caCCAGCUGUgGUCGCUCUUca-------CGCG- -5'
19161 5' -55 NC_004684.1 + 41247 0.66 0.785091
Target:  5'- ---cUCGAUcugcgcgGCCAGCGAGGugcuGGUGCGg -3'
miRNA:   3'- caccAGCUG-------UGGUCGCUCU----UCACGCg -5'
19161 5' -55 NC_004684.1 + 55807 0.66 0.776236
Target:  5'- -aGG-CG-CACCGGCGGGcuGGUGUGg -3'
miRNA:   3'- caCCaGCuGUGGUCGCUCu-UCACGCg -5'
19161 5' -55 NC_004684.1 + 58380 0.66 0.776236
Target:  5'- -gGGUCGAUGCCuucGCGcaucAGcaccGUGCGCa -3'
miRNA:   3'- caCCAGCUGUGGu--CGC----UCuu--CACGCG- -5'
19161 5' -55 NC_004684.1 + 21973 0.66 0.776236
Target:  5'- -cGG-CGACACCgaGGCcaaGGuGGUGCGCc -3'
miRNA:   3'- caCCaGCUGUGG--UCGc--UCuUCACGCG- -5'
19161 5' -55 NC_004684.1 + 28033 0.66 0.776236
Target:  5'- cUGGUucccCGACACCAuUGAcGAGUGgGCg -3'
miRNA:   3'- cACCA----GCUGUGGUcGCUcUUCACgCG- -5'
19161 5' -55 NC_004684.1 + 39742 0.66 0.775245
Target:  5'- -aGGUCGcucguggGCACCu-CGAcaccGAGGUGCGCc -3'
miRNA:   3'- caCCAGC-------UGUGGucGCU----CUUCACGCG- -5'
19161 5' -55 NC_004684.1 + 7324 0.66 0.775245
Target:  5'- aUGGcCGACGCguGCucGGugugcaacccgccGGUGCGCg -3'
miRNA:   3'- cACCaGCUGUGguCGcuCU-------------UCACGCG- -5'
19161 5' -55 NC_004684.1 + 42711 0.66 0.773258
Target:  5'- aUGGUCGGCaggccuggaaccucACCgccgucGGCGAaGugcAGUGCGCg -3'
miRNA:   3'- cACCAGCUG--------------UGG------UCGCU-Cu--UCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.