miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19164 3' -57.1 NC_004684.1 + 31864 0.66 0.700542
Target:  5'- cGCCGuGCGAGcUGcccgcCGACGUGCUGGUg -3'
miRNA:   3'- -UGGC-UGCUCcACaa---GUUGCGCGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 26764 0.66 0.700542
Target:  5'- gACCGACGAcuuccggcaguuccgGGgugacuucaaggcGUUCGACGCcacggGCCGGUu -3'
miRNA:   3'- -UGGCUGCU---------------CCa------------CAAGUUGCG-----CGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 37725 0.66 0.700542
Target:  5'- cCCGGCGAGGUGga----GCGCCu-- -3'
miRNA:   3'- uGGCUGCUCCACaaguugCGCGGcca -5'
19164 3' -57.1 NC_004684.1 + 28966 0.66 0.690038
Target:  5'- uCCGAcuuCGAGGUGgagCugagccuGCGCGaCCGGg -3'
miRNA:   3'- uGGCU---GCUCCACaa-Gu------UGCGC-GGCCa -5'
19164 3' -57.1 NC_004684.1 + 35807 0.66 0.690038
Target:  5'- cCCGGCGAcGGUGgUCAuucACGaCGCCGc- -3'
miRNA:   3'- uGGCUGCU-CCACaAGU---UGC-GCGGCca -5'
19164 3' -57.1 NC_004684.1 + 53922 0.66 0.690038
Target:  5'- --aGGCGAGGUGcggggUCAcCGUGUCGGc -3'
miRNA:   3'- uggCUGCUCCACa----AGUuGCGCGGCCa -5'
19164 3' -57.1 NC_004684.1 + 46516 0.66 0.690038
Target:  5'- uGCCGAUGAcGGUGgacuugccugCAccggucggaagaACGaCGCCGGUg -3'
miRNA:   3'- -UGGCUGCU-CCACaa--------GU------------UGC-GCGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 20220 0.66 0.679482
Target:  5'- aGCCuuuCGccuGGGUGcgCcuGGCGCGCCGGUa -3'
miRNA:   3'- -UGGcu-GC---UCCACaaG--UUGCGCGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 50006 0.66 0.669944
Target:  5'- uCUGACcGGGUGUgcgcaccgucggcggCAGCGUGgCCGGUg -3'
miRNA:   3'- uGGCUGcUCCACAa--------------GUUGCGC-GGCCA- -5'
19164 3' -57.1 NC_004684.1 + 41163 0.66 0.668882
Target:  5'- cGCCGgacccgcgcGCGGGGUGg--AACGgGUCGGUg -3'
miRNA:   3'- -UGGC---------UGCUCCACaagUUGCgCGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 5694 0.66 0.668882
Target:  5'- cCUGACGccGGUGgagCAGCGCGCCc-- -3'
miRNA:   3'- uGGCUGCu-CCACaa-GUUGCGCGGcca -5'
19164 3' -57.1 NC_004684.1 + 53704 0.66 0.658251
Target:  5'- gGCCGACcgguaGGGGcggaUGUccggCAugGUGCCGGg -3'
miRNA:   3'- -UGGCUG-----CUCC----ACAa---GUugCGCGGCCa -5'
19164 3' -57.1 NC_004684.1 + 1942 0.66 0.658251
Target:  5'- uACCGGCGcacGGUGgcc-GCGCGCCGc- -3'
miRNA:   3'- -UGGCUGCu--CCACaaguUGCGCGGCca -5'
19164 3' -57.1 NC_004684.1 + 42117 0.67 0.647597
Target:  5'- cACCGcgcGCGAcauGGUGUUCAACGCcgacGCCa-- -3'
miRNA:   3'- -UGGC---UGCU---CCACAAGUUGCG----CGGcca -5'
19164 3' -57.1 NC_004684.1 + 48502 0.67 0.63693
Target:  5'- cGCCGACGuGGaGgagc-CGCGCUGGUg -3'
miRNA:   3'- -UGGCUGCuCCaCaaguuGCGCGGCCA- -5'
19164 3' -57.1 NC_004684.1 + 57552 0.67 0.626258
Target:  5'- cACCGGCGGcGGUGaUCGACG-GCaagaCGGUg -3'
miRNA:   3'- -UGGCUGCU-CCACaAGUUGCgCG----GCCA- -5'
19164 3' -57.1 NC_004684.1 + 50995 0.67 0.615592
Target:  5'- cACCGuCuGGGUGcggauguagUCGAUGUGCCGGg -3'
miRNA:   3'- -UGGCuGcUCCACa--------AGUUGCGCGGCCa -5'
19164 3' -57.1 NC_004684.1 + 25508 0.67 0.615592
Target:  5'- gACCGGCGAgcGGcUGUUCucgaccgcCGaCGCCGGg -3'
miRNA:   3'- -UGGCUGCU--CC-ACAAGuu------GC-GCGGCCa -5'
19164 3' -57.1 NC_004684.1 + 26771 0.67 0.615592
Target:  5'- gGCCGcGCGGcGGUGaUCAACGUgguGCUGGa -3'
miRNA:   3'- -UGGC-UGCU-CCACaAGUUGCG---CGGCCa -5'
19164 3' -57.1 NC_004684.1 + 43433 0.67 0.604938
Target:  5'- cCCGGCGAGGccgaggUCggUGCGgCGGg -3'
miRNA:   3'- uGGCUGCUCCaca---AGuuGCGCgGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.