miRNA display CGI


Results 1 - 20 of 471 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19164 5' -58.1 NC_004684.1 + 36730 0.66 0.667368
Target:  5'- cGCAUCGaccuguucGCCGUCccggcgcuGACGCCGCCagggccgcgcccgguGCCGAc -3'
miRNA:   3'- -CGUGGC--------CGGUAG--------CUGUGGUGG---------------UGGCU- -5'
19164 5' -58.1 NC_004684.1 + 21943 0.66 0.663158
Target:  5'- uCugCGGCCuggugaUGACGCCAUgagcggcggcgaCACCGAg -3'
miRNA:   3'- cGugGCCGGua----GCUGUGGUG------------GUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 21314 0.66 0.663158
Target:  5'- gGCGaggCGGUgGUcCGGCGCgACCGCCGc -3'
miRNA:   3'- -CGUg--GCCGgUA-GCUGUGgUGGUGGCu -5'
19164 5' -58.1 NC_004684.1 + 4392 0.66 0.663158
Target:  5'- -aGCUGGuCUAUCG-CGCCagcaaguccugGCCGCCGGa -3'
miRNA:   3'- cgUGGCC-GGUAGCuGUGG-----------UGGUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 65305 0.66 0.663158
Target:  5'- aCGgCGGCC-UCGcuguGCACCACgGCCa- -3'
miRNA:   3'- cGUgGCCGGuAGC----UGUGGUGgUGGcu -5'
19164 5' -58.1 NC_004684.1 + 24694 0.66 0.663158
Target:  5'- aCGCCGGUgaccagauCGUUGAacugguugGCCACCGCCGu -3'
miRNA:   3'- cGUGGCCG--------GUAGCUg-------UGGUGGUGGCu -5'
19164 5' -58.1 NC_004684.1 + 67022 0.66 0.663158
Target:  5'- -gACCGGCaccaCGAUgGCCugGCCACCGAg -3'
miRNA:   3'- cgUGGCCGgua-GCUG-UGG--UGGUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 3843 0.66 0.663158
Target:  5'- gGCAgCGGCCGagGAgGCCGagCGCCa- -3'
miRNA:   3'- -CGUgGCCGGUagCUgUGGUg-GUGGcu -5'
19164 5' -58.1 NC_004684.1 + 56310 0.66 0.663158
Target:  5'- cGCGCCGGgaCGUgGAgACCGCgCugCGc -3'
miRNA:   3'- -CGUGGCCg-GUAgCUgUGGUG-GugGCu -5'
19164 5' -58.1 NC_004684.1 + 13551 0.66 0.663158
Target:  5'- uGCGCCuggcGGCCAUCGGCuaCugCGUCGAg -3'
miRNA:   3'- -CGUGG----CCGGUAGCUGugGugGUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 9373 0.66 0.663158
Target:  5'- -aGCCGGacaCCGaggaCGACGCCGgUACCGAc -3'
miRNA:   3'- cgUGGCC---GGUa---GCUGUGGUgGUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 54138 0.66 0.663158
Target:  5'- nGCGCUGGCgGUC-ACGgCCugGCCACgGAa -3'
miRNA:   3'- -CGUGGCCGgUAGcUGU-GG--UGGUGgCU- -5'
19164 5' -58.1 NC_004684.1 + 19680 0.66 0.663158
Target:  5'- cUACCGGCgCggCGGCAagGCCugGCCGAg -3'
miRNA:   3'- cGUGGCCG-GuaGCUGUggUGG--UGGCU- -5'
19164 5' -58.1 NC_004684.1 + 29772 0.66 0.663158
Target:  5'- cGCACCgacGGCguUCGGCAUgGgCgGCCGGg -3'
miRNA:   3'- -CGUGG---CCGguAGCUGUGgU-GgUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 9036 0.66 0.663158
Target:  5'- gGCaACCGGCgCggCaACGCCagcaggGCCACCGGg -3'
miRNA:   3'- -CG-UGGCCG-GuaGcUGUGG------UGGUGGCU- -5'
19164 5' -58.1 NC_004684.1 + 37128 0.66 0.663158
Target:  5'- cGUGCC-GCCAgCGcACugCGCCGCCa- -3'
miRNA:   3'- -CGUGGcCGGUaGC-UGugGUGGUGGcu -5'
19164 5' -58.1 NC_004684.1 + 61533 0.66 0.663158
Target:  5'- uGC-CCGGCCugccaGUCGcACGCCugguccucgaacACCGCCa- -3'
miRNA:   3'- -CGuGGCCGG-----UAGC-UGUGG------------UGGUGGcu -5'
19164 5' -58.1 NC_004684.1 + 11292 0.66 0.663158
Target:  5'- -aACCGuGCCAcCGcCACCGCCAgCa- -3'
miRNA:   3'- cgUGGC-CGGUaGCuGUGGUGGUgGcu -5'
19164 5' -58.1 NC_004684.1 + 55311 0.66 0.659998
Target:  5'- cGCGCgGGCCAgcaccucgucgcgcUCGGCGgCCaggcgaGCCGCCu- -3'
miRNA:   3'- -CGUGgCCGGU--------------AGCUGU-GG------UGGUGGcu -5'
19164 5' -58.1 NC_004684.1 + 15332 0.66 0.659998
Target:  5'- aGCACUGGaCCAuacgcacaaccgguUUGuCGCCAUCGCgGAg -3'
miRNA:   3'- -CGUGGCC-GGU--------------AGCuGUGGUGGUGgCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.