miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19169 3' -56 NC_004684.1 + 63146 0.67 0.63918
Target:  5'- --gUGGCCGAGU-GCGGCUC-CUGCGc -3'
miRNA:   3'- cgaGCUGGCUCGuUGUCGAGcGACGU- -5'
19169 3' -56 NC_004684.1 + 7837 0.68 0.606568
Target:  5'- cGCUgGugCGA-CAACGGCgcgCGCUGgCGg -3'
miRNA:   3'- -CGAgCugGCUcGUUGUCGa--GCGAC-GU- -5'
19169 3' -56 NC_004684.1 + 57235 0.68 0.595728
Target:  5'- cGCggUGGCC-AGCGGCGGCUgGCUGa- -3'
miRNA:   3'- -CGa-GCUGGcUCGUUGUCGAgCGACgu -5'
19169 3' -56 NC_004684.1 + 5319 0.68 0.563424
Target:  5'- cGCUggCGACCGuGCAGCAGUggGUgGCGg -3'
miRNA:   3'- -CGA--GCUGGCuCGUUGUCGagCGaCGU- -5'
19169 3' -56 NC_004684.1 + 24116 0.69 0.552753
Target:  5'- aGCcCGgcacGCCGAcGCAGCAGCcguaccCGCUGCGc -3'
miRNA:   3'- -CGaGC----UGGCU-CGUUGUCGa-----GCGACGU- -5'
19169 3' -56 NC_004684.1 + 64739 0.69 0.542144
Target:  5'- uGCUUGACCGucAGgAACaccAGCUCGCUcauGCGu -3'
miRNA:   3'- -CGAGCUGGC--UCgUUG---UCGAGCGA---CGU- -5'
19169 3' -56 NC_004684.1 + 54723 0.69 0.542144
Target:  5'- -gUCGGCCuccaccagcGAGC-GCAGCUCGC-GCAc -3'
miRNA:   3'- cgAGCUGG---------CUCGuUGUCGAGCGaCGU- -5'
19169 3' -56 NC_004684.1 + 40554 0.69 0.542144
Target:  5'- uGCUCGACCGGucCAcCAGCgCGCUGg- -3'
miRNA:   3'- -CGAGCUGGCUc-GUuGUCGaGCGACgu -5'
19169 3' -56 NC_004684.1 + 48065 0.69 0.531604
Target:  5'- cGCUCGGCCacGGCGGCGGCguaUGCgGCc -3'
miRNA:   3'- -CGAGCUGGc-UCGUUGUCGa--GCGaCGu -5'
19169 3' -56 NC_004684.1 + 33658 0.69 0.531604
Target:  5'- cCUCG-CCGGGC-AUGGCgUCGCUGUg -3'
miRNA:   3'- cGAGCuGGCUCGuUGUCG-AGCGACGu -5'
19169 3' -56 NC_004684.1 + 80 0.69 0.521138
Target:  5'- cCUCGACCaAGUcaucgccguuuGGCAGCUCGCccgGCGc -3'
miRNA:   3'- cGAGCUGGcUCG-----------UUGUCGAGCGa--CGU- -5'
19169 3' -56 NC_004684.1 + 38606 0.69 0.521138
Target:  5'- aGCUCGgaACCGGGUGGCAuGC-CGCUGa- -3'
miRNA:   3'- -CGAGC--UGGCUCGUUGU-CGaGCGACgu -5'
19169 3' -56 NC_004684.1 + 61800 0.69 0.510754
Target:  5'- aGCUCGGCCccgucGGCAgGCGGgUCGCcuUGCAg -3'
miRNA:   3'- -CGAGCUGGc----UCGU-UGUCgAGCG--ACGU- -5'
19169 3' -56 NC_004684.1 + 26929 0.7 0.480146
Target:  5'- cGC-CGAgacccCCGAGCAGCGGC-CGCcuggGCAc -3'
miRNA:   3'- -CGaGCU-----GGCUCGUUGUCGaGCGa---CGU- -5'
19169 3' -56 NC_004684.1 + 30482 0.7 0.479141
Target:  5'- cGCUCGGcuaugacCCGAGCGugggGCGGCUggCGCUGgGg -3'
miRNA:   3'- -CGAGCU-------GGCUCGU----UGUCGA--GCGACgU- -5'
19169 3' -56 NC_004684.1 + 2711 0.7 0.470143
Target:  5'- uGCUCGACUGGGacguacgcaAGguGC-CGCUGCGc -3'
miRNA:   3'- -CGAGCUGGCUCg--------UUguCGaGCGACGU- -5'
19169 3' -56 NC_004684.1 + 12424 0.71 0.421813
Target:  5'- uGUUCGACCgcagaGAGCGACcGuCUgGCUGCGg -3'
miRNA:   3'- -CGAGCUGG-----CUCGUUGuC-GAgCGACGU- -5'
19169 3' -56 NC_004684.1 + 63513 0.71 0.41251
Target:  5'- aGCagggCGGCCuGGCGucGCAGCUCGCggGCGu -3'
miRNA:   3'- -CGa---GCUGGcUCGU--UGUCGAGCGa-CGU- -5'
19169 3' -56 NC_004684.1 + 63217 0.71 0.403335
Target:  5'- uCUCGGCCac-CGGCGGCUCGUUGCc -3'
miRNA:   3'- cGAGCUGGcucGUUGUCGAGCGACGu -5'
19169 3' -56 NC_004684.1 + 57940 0.72 0.367957
Target:  5'- uGC-CGACCGccuGC-GguGCUCGCUGCGg -3'
miRNA:   3'- -CGaGCUGGCu--CGuUguCGAGCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.