miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19169 3' -56 NC_004684.1 + 43965 0.66 0.703958
Target:  5'- ---aGGCCGAGCAuCAGCcgugCGCggGCGu -3'
miRNA:   3'- cgagCUGGCUCGUuGUCGa---GCGa-CGU- -5'
19169 3' -56 NC_004684.1 + 24116 0.69 0.552753
Target:  5'- aGCcCGgcacGCCGAcGCAGCAGCcguaccCGCUGCGc -3'
miRNA:   3'- -CGaGC----UGGCU-CGUUGUCGa-----GCGACGU- -5'
19169 3' -56 NC_004684.1 + 54986 0.67 0.65005
Target:  5'- cGC-CGACCacAGCgGACGGCUC-CUGCGg -3'
miRNA:   3'- -CGaGCUGGc-UCG-UUGUCGAGcGACGU- -5'
19169 3' -56 NC_004684.1 + 41069 0.67 0.660905
Target:  5'- aGCUgGACCGAG-GACAaCUCGgUGUAc -3'
miRNA:   3'- -CGAgCUGGCUCgUUGUcGAGCgACGU- -5'
19169 3' -56 NC_004684.1 + 46288 0.67 0.671733
Target:  5'- cGCggCGGCCGAGCGcguuGCGGCgcuugGCgUGCGc -3'
miRNA:   3'- -CGa-GCUGGCUCGU----UGUCGag---CG-ACGU- -5'
19169 3' -56 NC_004684.1 + 26351 0.66 0.682525
Target:  5'- cGCUCGGCCauuccgucGGGCAACGGCaccggcaacgUCgGCgGCGa -3'
miRNA:   3'- -CGAGCUGG--------CUCGUUGUCG----------AG-CGaCGU- -5'
19169 3' -56 NC_004684.1 + 18997 0.66 0.693271
Target:  5'- uCUCGGCC-AGCucgcGCAGgUCGCUGg- -3'
miRNA:   3'- cGAGCUGGcUCGu---UGUCgAGCGACgu -5'
19169 3' -56 NC_004684.1 + 23956 0.66 0.693271
Target:  5'- cGC-CuGCCGAGCcuguacaacccgGACGGCUCGCU-CAa -3'
miRNA:   3'- -CGaGcUGGCUCG------------UUGUCGAGCGAcGU- -5'
19169 3' -56 NC_004684.1 + 46590 0.66 0.693271
Target:  5'- cGCUCGACgGcGGCGACGGCg-GCgGUu -3'
miRNA:   3'- -CGAGCUGgC-UCGUUGUCGagCGaCGu -5'
19169 3' -56 NC_004684.1 + 33658 0.69 0.531604
Target:  5'- cCUCG-CCGGGC-AUGGCgUCGCUGUg -3'
miRNA:   3'- cGAGCuGGCUCGuUGUCG-AGCGACGu -5'
19169 3' -56 NC_004684.1 + 80 0.69 0.521138
Target:  5'- cCUCGACCaAGUcaucgccguuuGGCAGCUCGCccgGCGc -3'
miRNA:   3'- cGAGCUGGcUCG-----------UUGUCGAGCGa--CGU- -5'
19169 3' -56 NC_004684.1 + 61800 0.69 0.510754
Target:  5'- aGCUCGGCCccgucGGCAgGCGGgUCGCcuUGCAg -3'
miRNA:   3'- -CGAGCUGGc----UCGU-UGUCgAGCG--ACGU- -5'
19169 3' -56 NC_004684.1 + 12042 0.77 0.191594
Target:  5'- uGCUCGACC-AGCAggagGCGGCUCGCcugGCc -3'
miRNA:   3'- -CGAGCUGGcUCGU----UGUCGAGCGa--CGu -5'
19169 3' -56 NC_004684.1 + 54824 0.72 0.351084
Target:  5'- aGUUCGACCGGGCGgucaacgaGCAcGCUgGCaGCAa -3'
miRNA:   3'- -CGAGCUGGCUCGU--------UGU-CGAgCGaCGU- -5'
19169 3' -56 NC_004684.1 + 5888 0.72 0.351084
Target:  5'- aGCcUGACCGGGUGGCGGCggCGCUGa- -3'
miRNA:   3'- -CGaGCUGGCUCGUUGUCGa-GCGACgu -5'
19169 3' -56 NC_004684.1 + 57940 0.72 0.367957
Target:  5'- uGC-CGACCGccuGC-GguGCUCGCUGCGg -3'
miRNA:   3'- -CGaGCUGGCu--CGuUguCGAGCGACGU- -5'
19169 3' -56 NC_004684.1 + 63217 0.71 0.403335
Target:  5'- uCUCGGCCac-CGGCGGCUCGUUGCc -3'
miRNA:   3'- cGAGCUGGcucGUUGUCGAGCGACGu -5'
19169 3' -56 NC_004684.1 + 63513 0.71 0.41251
Target:  5'- aGCagggCGGCCuGGCGucGCAGCUCGCggGCGu -3'
miRNA:   3'- -CGa---GCUGGcUCGU--UGUCGAGCGa-CGU- -5'
19169 3' -56 NC_004684.1 + 12424 0.71 0.421813
Target:  5'- uGUUCGACCgcagaGAGCGACcGuCUgGCUGCGg -3'
miRNA:   3'- -CGAGCUGG-----CUCGUUGuC-GAgCGACGU- -5'
19169 3' -56 NC_004684.1 + 30482 0.7 0.479141
Target:  5'- cGCUCGGcuaugacCCGAGCGugggGCGGCUggCGCUGgGg -3'
miRNA:   3'- -CGAGCU-------GGCUCGU----UGUCGA--GCGACgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.