miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19169 5' -63.9 NC_004684.1 + 19798 0.66 0.372159
Target:  5'- cGgUGUGCGGCcuACaUCGCCgagcacacugaGCCGAGCa -3'
miRNA:   3'- -CgACGCGCCG--UG-GGCGGa----------CGGCUCGg -5'
19169 5' -63.9 NC_004684.1 + 52210 0.66 0.372159
Target:  5'- cGCUGCGCaGCACCagucccaggUGCgUGgCGgcggcGGCCa -3'
miRNA:   3'- -CGACGCGcCGUGG---------GCGgACgGC-----UCGG- -5'
19169 5' -63.9 NC_004684.1 + 53044 0.66 0.372159
Target:  5'- cCUGCGCGGUGCCCaGCacgGUgGuGUCc -3'
miRNA:   3'- cGACGCGCCGUGGG-CGga-CGgCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 22139 0.66 0.372159
Target:  5'- gGCcGCGaccaGCGCUgG-CUGCCGGGCCu -3'
miRNA:   3'- -CGaCGCgc--CGUGGgCgGACGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 44937 0.66 0.372159
Target:  5'- uGgaGCGCgGGCGggaUCGCC-GCCGcGCCg -3'
miRNA:   3'- -CgaCGCG-CCGUg--GGCGGaCGGCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 12048 0.66 0.372159
Target:  5'- uGCaUGCGCGccaggcuCACCUGCCaGCCGucGGCg -3'
miRNA:   3'- -CG-ACGCGCc------GUGGGCGGaCGGC--UCGg -5'
19169 5' -63.9 NC_004684.1 + 27794 0.66 0.371344
Target:  5'- cGgUGCGCGGCGguucgguCCUgGCCUGCUccugguGGGCg -3'
miRNA:   3'- -CgACGCGCCGU-------GGG-CGGACGG------CUCGg -5'
19169 5' -63.9 NC_004684.1 + 14211 0.66 0.364067
Target:  5'- aGCgGCGCGGUcgGCCUGUCc-CCGgaGGCCu -3'
miRNA:   3'- -CGaCGCGCCG--UGGGCGGacGGC--UCGG- -5'
19169 5' -63.9 NC_004684.1 + 48963 0.66 0.364067
Target:  5'- aGCcaCGuCGGcCGCCggugCGCCcGCCGGGCCg -3'
miRNA:   3'- -CGacGC-GCC-GUGG----GCGGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 43599 0.66 0.364067
Target:  5'- uGUUGCgguuGCGGUgaacaGCCCgGCCacggugugGCCGAGCg -3'
miRNA:   3'- -CGACG----CGCCG-----UGGG-CGGa-------CGGCUCGg -5'
19169 5' -63.9 NC_004684.1 + 47261 0.66 0.364067
Target:  5'- gGCUGCGCGGaacagGCCCuCCagGuuGguguAGCCg -3'
miRNA:   3'- -CGACGCGCCg----UGGGcGGa-CggC----UCGG- -5'
19169 5' -63.9 NC_004684.1 + 13098 0.66 0.364067
Target:  5'- --cGCGCGGUGCacgCCGCCccaCCG-GCCa -3'
miRNA:   3'- cgaCGCGCCGUG---GGCGGac-GGCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 3289 0.66 0.364067
Target:  5'- uGCUGC-CGGaCACuCCGUUggucaucuccggUGgCGAGCCg -3'
miRNA:   3'- -CGACGcGCC-GUG-GGCGG------------ACgGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 62646 0.66 0.364067
Target:  5'- --gGuCGCGGCACuuGCg-GCUGuGGCCg -3'
miRNA:   3'- cgaC-GCGCCGUGggCGgaCGGC-UCGG- -5'
19169 5' -63.9 NC_004684.1 + 66506 0.66 0.356098
Target:  5'- uGUUGCGCGGCGCggggaUCaCgUGCUG-GCCg -3'
miRNA:   3'- -CGACGCGCCGUG-----GGcGgACGGCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 18643 0.66 0.356098
Target:  5'- --aGCGUGGCGCUggacaugGCCUGCCacaucGCCa -3'
miRNA:   3'- cgaCGCGCCGUGGg------CGGACGGcu---CGG- -5'
19169 5' -63.9 NC_004684.1 + 61336 0.66 0.356098
Target:  5'- --aGCGCGGCGuggUUgGUCaGCUGGGCCg -3'
miRNA:   3'- cgaCGCGCCGU---GGgCGGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 16150 0.66 0.356098
Target:  5'- cGC-GUGCGGCA-UCGaCCgGCCGAugGCCa -3'
miRNA:   3'- -CGaCGCGCCGUgGGC-GGaCGGCU--CGG- -5'
19169 5' -63.9 NC_004684.1 + 63910 0.66 0.356098
Target:  5'- gGCcacgGUGCGGC-CCgGCgUgGCUGAGCUu -3'
miRNA:   3'- -CGa---CGCGCCGuGGgCGgA-CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 2557 0.66 0.356098
Target:  5'- aGC-GCGCGGagGCCuuCGCCgagGCCGGuguGCCc -3'
miRNA:   3'- -CGaCGCGCCg-UGG--GCGGa--CGGCU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.