miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19169 5' -63.9 NC_004684.1 + 450 0.67 0.310897
Target:  5'- cGCUGCGC-GCAUCgugGCCguggacaaCCGGGCCa -3'
miRNA:   3'- -CGACGCGcCGUGGg--CGGac------GGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 546 0.66 0.326205
Target:  5'- --aGCGCGGUcgaGgCCGCCaccgaggaggacaagGCCGAGgCCa -3'
miRNA:   3'- cgaCGCGCCG---UgGGCGGa--------------CGGCUC-GG- -5'
19169 5' -63.9 NC_004684.1 + 689 0.68 0.245513
Target:  5'- cGCcGCGCaGCGCaagaCCGCC-GCCGGGUg -3'
miRNA:   3'- -CGaCGCGcCGUG----GGCGGaCGGCUCGg -5'
19169 5' -63.9 NC_004684.1 + 827 0.68 0.276667
Target:  5'- cGUgugGCGCaauuccggugaGGCGCacaaCGCCUaccgccgugcccGCCGGGCCg -3'
miRNA:   3'- -CGa--CGCG-----------CCGUGg---GCGGA------------CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 883 0.66 0.325463
Target:  5'- cGCUGaagGCGGCccgcgaGgCCGCCgccaagGCCuAGCCg -3'
miRNA:   3'- -CGACg--CGCCG------UgGGCGGa-----CGGcUCGG- -5'
19169 5' -63.9 NC_004684.1 + 1097 0.71 0.173565
Target:  5'- cGCUGcCGUcgGGCACCCGCaacgugGCCGuccGCUg -3'
miRNA:   3'- -CGAC-GCG--CCGUGGGCGga----CGGCu--CGG- -5'
19169 5' -63.9 NC_004684.1 + 1400 0.71 0.148924
Target:  5'- cGUUGCacUGGCcagcgACCUggagGCCUGCCGGGCCa -3'
miRNA:   3'- -CGACGc-GCCG-----UGGG----CGGACGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 1914 0.79 0.039183
Target:  5'- cCUGC-CGG-ACCCgGCCUGCCGGGCCu -3'
miRNA:   3'- cGACGcGCCgUGGG-CGGACGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 2270 0.71 0.169219
Target:  5'- gGCgGCG-GGCAUugCCGCCaGCCuGGGCCa -3'
miRNA:   3'- -CGaCGCgCCGUG--GGCGGaCGG-CUCGG- -5'
19169 5' -63.9 NC_004684.1 + 2557 0.66 0.356098
Target:  5'- aGC-GCGCGGagGCCuuCGCCgagGCCGGuguGCCc -3'
miRNA:   3'- -CGaCGCGCCg-UGG--GCGGa--CGGCU---CGG- -5'
19169 5' -63.9 NC_004684.1 + 2738 0.68 0.269552
Target:  5'- cGCUGCGCGccgacaucgcgguGCGCCacgaCGCCgacgGCaaCGAGCUg -3'
miRNA:   3'- -CGACGCGC-------------CGUGG----GCGGa---CG--GCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 2838 0.71 0.148924
Target:  5'- cCUGCGCaccaacccGGuCACCaagGCC-GCCGAGCCg -3'
miRNA:   3'- cGACGCG--------CC-GUGGg--CGGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 3146 0.67 0.296831
Target:  5'- -gUGCGCcaaCACCCagcGCCUgGCCGAGgCCa -3'
miRNA:   3'- cgACGCGcc-GUGGG---CGGA-CGGCUC-GG- -5'
19169 5' -63.9 NC_004684.1 + 3289 0.66 0.364067
Target:  5'- uGCUGC-CGGaCACuCCGUUggucaucuccggUGgCGAGCCg -3'
miRNA:   3'- -CGACGcGCC-GUG-GGCGG------------ACgGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 3385 0.68 0.245513
Target:  5'- --aGCGCGGCAagCGCCUGgaGAccGCCg -3'
miRNA:   3'- cgaCGCGCCGUggGCGGACggCU--CGG- -5'
19169 5' -63.9 NC_004684.1 + 3631 0.66 0.340532
Target:  5'- uGCUGU-CGGCcgcaaacuaguGgCCGCCcggUGCCGGGUCa -3'
miRNA:   3'- -CGACGcGCCG-----------UgGGCGG---ACGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 3873 0.66 0.323246
Target:  5'- cGCUGCGCaGUGCCaagGCCUGgucagacauccucuCCGGGUa -3'
miRNA:   3'- -CGACGCGcCGUGGg--CGGAC--------------GGCUCGg -5'
19169 5' -63.9 NC_004684.1 + 4236 0.67 0.303801
Target:  5'- cCUGCGCGGCGCgCaggaGCC-GCacucGGCCa -3'
miRNA:   3'- cGACGCGCCGUG-Gg---CGGaCGgc--UCGG- -5'
19169 5' -63.9 NC_004684.1 + 5107 0.69 0.212033
Target:  5'- cGCUGgaGCaGCGCCUGgaCCUGCUGAagGCCa -3'
miRNA:   3'- -CGACg-CGcCGUGGGC--GGACGGCU--CGG- -5'
19169 5' -63.9 NC_004684.1 + 5580 0.82 0.026685
Target:  5'- cCUGCaaGGCgACCCGCCUGCCGAcgggGCCg -3'
miRNA:   3'- cGACGcgCCG-UGGGCGGACGGCU----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.