miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19169 5' -63.9 NC_004684.1 + 15090 0.71 0.152797
Target:  5'- --gGCGCGGUGgCCGCCcuggagGCCGAccuuGCCg -3'
miRNA:   3'- cgaCGCGCCGUgGGCGGa-----CGGCU----CGG- -5'
19169 5' -63.9 NC_004684.1 + 8420 0.73 0.124227
Target:  5'- -gUGUGUGGaACCCGCgCgcccGCCGGGCCa -3'
miRNA:   3'- cgACGCGCCgUGGGCG-Ga---CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 13979 0.72 0.127507
Target:  5'- --cGCGCGGCGCagGCCaGCCcGGCCa -3'
miRNA:   3'- cgaCGCGCCGUGggCGGaCGGcUCGG- -5'
19169 5' -63.9 NC_004684.1 + 63538 0.72 0.134309
Target:  5'- cGCggGCGUGGCGCUCgGCCUccucgGCCGcuGCCa -3'
miRNA:   3'- -CGa-CGCGCCGUGGG-CGGA-----CGGCu-CGG- -5'
19169 5' -63.9 NC_004684.1 + 27880 0.72 0.140352
Target:  5'- cGCUGCuCGGCuacgacgacaguugGCCCgGCCUGCgCGAGUUc -3'
miRNA:   3'- -CGACGcGCCG--------------UGGG-CGGACG-GCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 58953 0.72 0.141444
Target:  5'- cUUGCGCcgGGC-CCUGUCcGCCGAGCUg -3'
miRNA:   3'- cGACGCG--CCGuGGGCGGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 10806 0.71 0.148924
Target:  5'- --cGUaGCGGCAUCCGgCgGCUGGGCCg -3'
miRNA:   3'- cgaCG-CGCCGUGGGCgGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 22253 0.71 0.148924
Target:  5'- cGCgcagGCGCGaGCAUgggaCCGCCUGgCGgcGGCCa -3'
miRNA:   3'- -CGa---CGCGC-CGUG----GGCGGACgGC--UCGG- -5'
19169 5' -63.9 NC_004684.1 + 63587 0.71 0.148924
Target:  5'- cCUGCGCGGCGCggcggugguuaCCGCCU-CgGAcGCCa -3'
miRNA:   3'- cGACGCGCCGUG-----------GGCGGAcGgCU-CGG- -5'
19169 5' -63.9 NC_004684.1 + 58476 0.73 0.114851
Target:  5'- --aGCGCGaacuugccGCGCCCGCCcuucuUGCCGcGCCg -3'
miRNA:   3'- cgaCGCGC--------CGUGGGCGG-----ACGGCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 23552 0.73 0.111875
Target:  5'- gGCaucgGuCGCGGC-CUggacaGCCUGCCGGGCCg -3'
miRNA:   3'- -CGa---C-GCGCCGuGGg----CGGACGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 57514 0.73 0.108685
Target:  5'- cCUGCGCcggaucccgaGGCggugGCCCGCCUccagagcgcgaccGCCGAGCUg -3'
miRNA:   3'- cGACGCG----------CCG----UGGGCGGA-------------CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 28578 0.79 0.040268
Target:  5'- cGgUGUGCGGCGgCUGCCUGCCG-GUCg -3'
miRNA:   3'- -CgACGCGCCGUgGGCGGACGGCuCGG- -5'
19169 5' -63.9 NC_004684.1 + 61288 0.79 0.041271
Target:  5'- aGCUGCGCcgggucgauuuccGGCAgcaCCGCC-GCCGGGCCg -3'
miRNA:   3'- -CGACGCG-------------CCGUg--GGCGGaCGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 19685 0.78 0.047429
Target:  5'- --gGCGCGGCGgCaagGCCUgGCCGAGCCa -3'
miRNA:   3'- cgaCGCGCCGUgGg--CGGA-CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 19761 0.76 0.063736
Target:  5'- cCUGCGCGGCcugccgguGCCCGCCgggggcgacaagaUGgCGGGCCu -3'
miRNA:   3'- cGACGCGCCG--------UGGGCGG-------------ACgGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 38810 0.76 0.067449
Target:  5'- --aGCgGCGGUGCCCGCCUGgCGGuGCCc -3'
miRNA:   3'- cgaCG-CGCCGUGGGCGGACgGCU-CGG- -5'
19169 5' -63.9 NC_004684.1 + 35616 0.74 0.090546
Target:  5'- cUUGCGCGGCACuacuuuCCGCgCguggugGCCGAGUCg -3'
miRNA:   3'- cGACGCGCCGUG------GGCG-Ga-----CGGCUCGG- -5'
19169 5' -63.9 NC_004684.1 + 11910 0.74 0.092985
Target:  5'- -gUGCGCGGCACCaccgacaGCCaggGCCGuccgcuGGCCa -3'
miRNA:   3'- cgACGCGCCGUGGg------CGGa--CGGC------UCGG- -5'
19169 5' -63.9 NC_004684.1 + 48983 0.74 0.09805
Target:  5'- gGC-GCGuCGGUGCCCuGCUgGCCGGGCCc -3'
miRNA:   3'- -CGaCGC-GCCGUGGG-CGGaCGGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.