miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19175 3' -56.9 NC_004684.1 + 37200 0.66 0.654532
Target:  5'- cGCGGCCagcugcUGGUGugcguGAGCUauuUCGCCAAa -3'
miRNA:   3'- uCGCUGG------ACCAC-----CUCGAgu-AGUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 46254 0.66 0.643597
Target:  5'- -cCGGCgUGGUGGAaCUCGUC-CCAc -3'
miRNA:   3'- ucGCUGgACCACCUcGAGUAGuGGUu -5'
19175 3' -56.9 NC_004684.1 + 9084 0.66 0.63265
Target:  5'- cGGCGucGCC-GGU-GAGCugUCAUCACCAGg -3'
miRNA:   3'- -UCGC--UGGaCCAcCUCG--AGUAGUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 22001 0.66 0.63265
Target:  5'- cAGgGuCC-GGUGGAGCUgGUCAgCAu -3'
miRNA:   3'- -UCgCuGGaCCACCUCGAgUAGUgGUu -5'
19175 3' -56.9 NC_004684.1 + 55607 0.66 0.63265
Target:  5'- cGGUGGCCUGGUcggcccacGGGGC-CAccaCACCGGa -3'
miRNA:   3'- -UCGCUGGACCA--------CCUCGaGUa--GUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 54286 0.66 0.610767
Target:  5'- cGCuGGCC-GGUGGGGCggCGUgCACCGc -3'
miRNA:   3'- uCG-CUGGaCCACCUCGa-GUA-GUGGUu -5'
19175 3' -56.9 NC_004684.1 + 56845 0.66 0.610767
Target:  5'- uGGCGcAgCUGGUGGAGCaccacgaggUCAgcgCACCc- -3'
miRNA:   3'- -UCGC-UgGACCACCUCG---------AGUa--GUGGuu -5'
19175 3' -56.9 NC_004684.1 + 30567 0.66 0.604213
Target:  5'- -uCGACCucggUGGUGGAGCUgGUCugggugucguagcugACCGAg -3'
miRNA:   3'- ucGCUGG----ACCACCUCGAgUAG---------------UGGUU- -5'
19175 3' -56.9 NC_004684.1 + 62970 0.67 0.588957
Target:  5'- uGGCGugCUcGGUGGuGCgcaCGUgGCCGGu -3'
miRNA:   3'- -UCGCugGA-CCACCuCGa--GUAgUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 26047 0.67 0.588957
Target:  5'- aGGCGGCCaGGgcgGcGAGUUCGagGCCAAc -3'
miRNA:   3'- -UCGCUGGaCCa--C-CUCGAGUagUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 9247 0.67 0.578101
Target:  5'- uGcCGACgCUGGcGGuGCUCAUCcCCGAg -3'
miRNA:   3'- uC-GCUG-GACCaCCuCGAGUAGuGGUU- -5'
19175 3' -56.9 NC_004684.1 + 29136 0.67 0.55653
Target:  5'- uGCGAgCUGGUGGuGCcgacgCAguUCGCCGc -3'
miRNA:   3'- uCGCUgGACCACCuCGa----GU--AGUGGUu -5'
19175 3' -56.9 NC_004684.1 + 65030 0.67 0.55653
Target:  5'- aGGCGACCUcGUGGcugAGgUCGUC-CCAGg -3'
miRNA:   3'- -UCGCUGGAcCACC---UCgAGUAGuGGUU- -5'
19175 3' -56.9 NC_004684.1 + 14093 0.67 0.556529
Target:  5'- gGGUGACCgGGUGGuguGGCUCAgCcCCGGu -3'
miRNA:   3'- -UCGCUGGaCCACC---UCGAGUaGuGGUU- -5'
19175 3' -56.9 NC_004684.1 + 2976 0.67 0.556529
Target:  5'- cGGUGcCCUGGacggcgGGGGCgcaccuUCGUCACCAu -3'
miRNA:   3'- -UCGCuGGACCa-----CCUCG------AGUAGUGGUu -5'
19175 3' -56.9 NC_004684.1 + 41616 0.67 0.556529
Target:  5'- cGGCGuGCCgccGGUGGAGC-CGgaCGCCAGg -3'
miRNA:   3'- -UCGC-UGGa--CCACCUCGaGUa-GUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 25117 0.67 0.54583
Target:  5'- -aCGACCcGGUGGucaccGC-CAUCACCAGc -3'
miRNA:   3'- ucGCUGGaCCACCu----CGaGUAGUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 8055 0.68 0.535196
Target:  5'- cAGCG-CCagcagGGUGcGGCUCAUUGCCAGc -3'
miRNA:   3'- -UCGCuGGa----CCACcUCGAGUAGUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 18861 0.68 0.535196
Target:  5'- cGGUGACCgGGUGGccgcaCUCAgggCACCAGc -3'
miRNA:   3'- -UCGCUGGaCCACCuc---GAGUa--GUGGUU- -5'
19175 3' -56.9 NC_004684.1 + 2541 0.68 0.534137
Target:  5'- uGCGgcACCUGcGUGGAGCgcgCGgaggccuUCGCCGAg -3'
miRNA:   3'- uCGC--UGGAC-CACCUCGa--GU-------AGUGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.