miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19175 5' -59.2 NC_004684.1 + 52899 0.66 0.598566
Target:  5'- cACCGGCGAcCGGCgugGUaccggcaaccacCUCGAUCGa -3'
miRNA:   3'- cUGGCCGCUcGCCGa--CAa-----------GAGCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 64485 0.66 0.59019
Target:  5'- aGGCCGGUG-GUGGCcucGUUCUggaaCGGCUGc -3'
miRNA:   3'- -CUGGCCGCuCGCCGa--CAAGA----GCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 10102 0.66 0.59019
Target:  5'- uGGCCGGgGuGCGGCUcgccgUCacaGGCCGa -3'
miRNA:   3'- -CUGGCCgCuCGCCGAca---AGag-CUGGC- -5'
19175 5' -59.2 NC_004684.1 + 54122 0.66 0.579748
Target:  5'- cACCGGCGgccaccAGCGcGCUGgcggUCaCGGCCu -3'
miRNA:   3'- cUGGCCGC------UCGC-CGACa---AGaGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 54522 0.66 0.579748
Target:  5'- -cCCGGCG-GCGGCcucggcgGUggcggcCUCGGCCu -3'
miRNA:   3'- cuGGCCGCuCGCCGa------CAa-----GAGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 24771 0.66 0.573502
Target:  5'- cACCGGCG-GCGGCgggggaggugccggGUcgaaggugccguUCUUGACCu -3'
miRNA:   3'- cUGGCCGCuCGCCGa-------------CA------------AGAGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 65438 0.66 0.558992
Target:  5'- cGCUGGCGuGCGGCg---CgCGGCCa -3'
miRNA:   3'- cUGGCCGCuCGCCGacaaGaGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 63747 0.66 0.558992
Target:  5'- -cCCGGCaccGGGCGGCcacuaGUUUgCGGCCGa -3'
miRNA:   3'- cuGGCCG---CUCGCCGa----CAAGaGCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 50333 0.66 0.558992
Target:  5'- cGGCCaGGCGGGCGGCcuccuUGgcaUCGGCa- -3'
miRNA:   3'- -CUGG-CCGCUCGCCG-----ACaagAGCUGgc -5'
19175 5' -59.2 NC_004684.1 + 24773 0.66 0.558992
Target:  5'- aGACCGGCaccGGGCcGCUGgUCgauaCGGCCa -3'
miRNA:   3'- -CUGGCCG---CUCGcCGACaAGa---GCUGGc -5'
19175 5' -59.2 NC_004684.1 + 19681 0.66 0.558992
Target:  5'- uACCGGCGcGGCGGCaaggCcUGGCCGa -3'
miRNA:   3'- cUGGCCGC-UCGCCGacaaGaGCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 25221 0.66 0.54869
Target:  5'- cACCGcGCaGuGCGGCgc-UCUCGACCc -3'
miRNA:   3'- cUGGC-CG-CuCGCCGacaAGAGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 39448 0.67 0.538449
Target:  5'- aGGCCgaGGCGuGCGGCUac-CUCGGCuCGu -3'
miRNA:   3'- -CUGG--CCGCuCGCCGAcaaGAGCUG-GC- -5'
19175 5' -59.2 NC_004684.1 + 64947 0.67 0.538449
Target:  5'- cGCCuGGCGGGCGGUggcccgGUUCaggucgaUGACCGc -3'
miRNA:   3'- cUGG-CCGCUCGCCGa-----CAAGa------GCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 9090 0.67 0.528274
Target:  5'- cGCCGGUGAGCugucaucaccaGGUgaUGacagUUUCGACCGg -3'
miRNA:   3'- cUGGCCGCUCG-----------CCG--ACa---AGAGCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 25838 0.67 0.52726
Target:  5'- cAUCGGCGgccagaugcucGGCGGcCUGUUCaacggccUCGGCCa -3'
miRNA:   3'- cUGGCCGC-----------UCGCC-GACAAG-------AGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 51327 0.67 0.508146
Target:  5'- cACCGGCGGGCcacGCUug-CUUGGCCa -3'
miRNA:   3'- cUGGCCGCUCGc--CGAcaaGAGCUGGc -5'
19175 5' -59.2 NC_004684.1 + 7559 0.67 0.498203
Target:  5'- gGACCGGCcccGGGUGGCgcugGUg--CGGCUGg -3'
miRNA:   3'- -CUGGCCG---CUCGCCGa---CAagaGCUGGC- -5'
19175 5' -59.2 NC_004684.1 + 18260 0.67 0.498203
Target:  5'- aGACCGGCGA-CGGUacGUUC-CaGGCCGa -3'
miRNA:   3'- -CUGGCCGCUcGCCGa-CAAGaG-CUGGC- -5'
19175 5' -59.2 NC_004684.1 + 64706 0.67 0.48541
Target:  5'- aGGCCGGgGAuGCGGUgcccggcgcugaaaUGgugCUUGACCGu -3'
miRNA:   3'- -CUGGCCgCU-CGCCG--------------ACaa-GAGCUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.