miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 3' -57.5 NC_004684.1 + 33153 0.66 0.582965
Target:  5'- aGCauggGCGucaGUACGCAGGCCcUCGACc- -3'
miRNA:   3'- -CGga--CGUg--CGUGCGUCCGG-AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 61181 0.66 0.582965
Target:  5'- gGUCgGCGgGguUGguGGCCUCGGCg- -3'
miRNA:   3'- -CGGaCGUgCguGCguCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 54627 0.66 0.582965
Target:  5'- gGCCgcagGCGCaGcCGCGCGGGCCaagagggcgUCGACc- -3'
miRNA:   3'- -CGGa---CGUG-C-GUGCGUCCGG---------AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 33098 0.66 0.582965
Target:  5'- gGCgCUGC-CG-ACGCAGGCgCUCGcGCUGg -3'
miRNA:   3'- -CG-GACGuGCgUGCGUCCG-GAGU-UGAU- -5'
19180 3' -57.5 NC_004684.1 + 4898 0.66 0.572195
Target:  5'- gGCCUGguCGC-CaCcGGCCUCGGCg- -3'
miRNA:   3'- -CGGACguGCGuGcGuCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 61679 0.66 0.572195
Target:  5'- cGCCUGCACGCcauugGCGuCGGuGCCgUgGGCa- -3'
miRNA:   3'- -CGGACGUGCG-----UGC-GUC-CGG-AgUUGau -5'
19180 3' -57.5 NC_004684.1 + 25504 0.66 0.572195
Target:  5'- gGCCaGCGCGUucauguCGCGGGCCU--GCg- -3'
miRNA:   3'- -CGGaCGUGCGu-----GCGUCCGGAguUGau -5'
19180 3' -57.5 NC_004684.1 + 47623 0.66 0.572195
Target:  5'- cGCCcccgGCGgGCACcgGCAGGCCgcgCAGgUAc -3'
miRNA:   3'- -CGGa---CGUgCGUG--CGUCCGGa--GUUgAU- -5'
19180 3' -57.5 NC_004684.1 + 4459 0.66 0.572195
Target:  5'- cGCC-GCGCGCugGUcGGCUUCGu--- -3'
miRNA:   3'- -CGGaCGUGCGugCGuCCGGAGUugau -5'
19180 3' -57.5 NC_004684.1 + 60920 0.67 0.561472
Target:  5'- gGCCacgGCGuCGCACGCcucGGCCaguUCGACa- -3'
miRNA:   3'- -CGGa--CGU-GCGUGCGu--CCGG---AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 23424 0.67 0.561472
Target:  5'- uGCUcccggUGCuGCGCACGguGGCCgaUCuGCUGg -3'
miRNA:   3'- -CGG-----ACG-UGCGUGCguCCGG--AGuUGAU- -5'
19180 3' -57.5 NC_004684.1 + 58326 0.67 0.550805
Target:  5'- cGCCgggucaugGCGCGCcCGguGGCC-CuGCUGg -3'
miRNA:   3'- -CGGa-------CGUGCGuGCguCCGGaGuUGAU- -5'
19180 3' -57.5 NC_004684.1 + 1704 0.67 0.550805
Target:  5'- aCCUGCAC-CugGCAGGCaC-CGGCc- -3'
miRNA:   3'- cGGACGUGcGugCGUCCG-GaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 51862 0.67 0.550805
Target:  5'- uCCUGCACcuccaGCACcuccaAGGCCUCGGCc- -3'
miRNA:   3'- cGGACGUG-----CGUGcg---UCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 42953 0.67 0.5402
Target:  5'- uGCUUGUACuugaGCACGaAGGCgUCGACUu -3'
miRNA:   3'- -CGGACGUG----CGUGCgUCCGgAGUUGAu -5'
19180 3' -57.5 NC_004684.1 + 57181 0.67 0.5402
Target:  5'- cGCUcGgGCGCAgGCGGGCCUgGAa-- -3'
miRNA:   3'- -CGGaCgUGCGUgCGUCCGGAgUUgau -5'
19180 3' -57.5 NC_004684.1 + 58378 0.67 0.529666
Target:  5'- cGCCccgcacgGCAcCGCGCGUggAGGCCUUGGCc- -3'
miRNA:   3'- -CGGa------CGU-GCGUGCG--UCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 42875 0.67 0.529666
Target:  5'- gGCC-GC-CGCACGCccGGCCUCuGGCa- -3'
miRNA:   3'- -CGGaCGuGCGUGCGu-CCGGAG-UUGau -5'
19180 3' -57.5 NC_004684.1 + 5859 0.67 0.529666
Target:  5'- gGCgUGCGa-CugGCAGGCCgggCAGCa- -3'
miRNA:   3'- -CGgACGUgcGugCGUCCGGa--GUUGau -5'
19180 3' -57.5 NC_004684.1 + 28987 0.67 0.529666
Target:  5'- aGCCUGCGCGaccgGgAGGCCU-AGCUGu -3'
miRNA:   3'- -CGGACGUGCgug-CgUCCGGAgUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.