miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 5' -59.3 NC_004684.1 + 64000 0.66 0.571231
Target:  5'- cGUUGGUcucgauGUGCAccucacACCccuUGCGCcAGGCGUg -3'
miRNA:   3'- -CGACCG------CACGU------UGG---ACGCGcUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 40918 0.66 0.571231
Target:  5'- gGCaUGGCGgGCAcgCUGuCGCGgccAGGCGUg -3'
miRNA:   3'- -CG-ACCGCaCGUugGAC-GCGC---UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 8041 0.66 0.571231
Target:  5'- gGCUGGCG-GUccuCCaGCGCcagcaGGGUGCg -3'
miRNA:   3'- -CGACCGCaCGuu-GGaCGCGc----UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 45239 0.66 0.571231
Target:  5'- uGCUGGUcaGgcccgGCAGCCaGCGCu-GGuCGCg -3'
miRNA:   3'- -CGACCG--Ca----CGUUGGaCGCGcuCC-GCG- -5'
19180 5' -59.3 NC_004684.1 + 63821 0.66 0.571231
Target:  5'- uGCUGGUGaUGguGCggaUG-GCGcGGCGCa -3'
miRNA:   3'- -CGACCGC-ACguUGg--ACgCGCuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 5771 0.66 0.560795
Target:  5'- cGgUGGgGcGCAGCgcgcuaCUGCGCcAGGCGUg -3'
miRNA:   3'- -CgACCgCaCGUUG------GACGCGcUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 36250 0.66 0.560795
Target:  5'- gGUUGGUGaGCAGgUUGUGCGccAGGuCGCc -3'
miRNA:   3'- -CGACCGCaCGUUgGACGCGC--UCC-GCG- -5'
19180 5' -59.3 NC_004684.1 + 5050 0.66 0.560795
Target:  5'- gGCUGGCGcGCG--CUGUGCugGAGGCc- -3'
miRNA:   3'- -CGACCGCaCGUugGACGCG--CUCCGcg -5'
19180 5' -59.3 NC_004684.1 + 28059 0.66 0.559754
Target:  5'- --gGGCG-GcCAACCggccuggGCGCGgcaacugGGGCGCu -3'
miRNA:   3'- cgaCCGCaC-GUUGGa------CGCGC-------UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 39625 0.66 0.559754
Target:  5'- gGC-GGgGUGUAcagcccgggcgacACCUGCGUcaucGAcGGCGCg -3'
miRNA:   3'- -CGaCCgCACGU-------------UGGACGCG----CU-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 20201 0.66 0.550413
Target:  5'- uCUGGCGacaacUGCGcagagccuuucGCCUGgGUGcgccuGGCGCg -3'
miRNA:   3'- cGACCGC-----ACGU-----------UGGACgCGCu----CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 41446 0.66 0.550413
Target:  5'- aGCUcGGCGUuggGCAcCUUGUugccgauguucgGCGAGaGCGCg -3'
miRNA:   3'- -CGA-CCGCA---CGUuGGACG------------CGCUC-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 38824 0.66 0.550413
Target:  5'- cCUGGCgGUGCccgacGGCCUG-GUGGcccuGGCGCu -3'
miRNA:   3'- cGACCG-CACG-----UUGGACgCGCU----CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 9343 0.66 0.550413
Target:  5'- aGgaGGCcuccgGUGCGuCCcgGCGCGAGGaGCc -3'
miRNA:   3'- -CgaCCG-----CACGUuGGa-CGCGCUCCgCG- -5'
19180 5' -59.3 NC_004684.1 + 32463 0.66 0.550413
Target:  5'- --cGGCGgGCAACCUGCGUauc-CGCa -3'
miRNA:   3'- cgaCCGCaCGUUGGACGCGcuccGCG- -5'
19180 5' -59.3 NC_004684.1 + 28856 0.66 0.550413
Target:  5'- cGCUGGCGUcucccggucgGCAuagugggaacACCgaacgGCGCGccguGGCGa -3'
miRNA:   3'- -CGACCGCA----------CGU----------UGGa----CGCGCu---CCGCg -5'
19180 5' -59.3 NC_004684.1 + 62596 0.66 0.550413
Target:  5'- cGUU-GCGgucgGCcACC-GCGcCGAGGCGCu -3'
miRNA:   3'- -CGAcCGCa---CGuUGGaCGC-GCUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 30204 0.66 0.549378
Target:  5'- aGCUGGcCGcGCGcgucgauGCUcgGCGCGAcguggcccucGGCGCg -3'
miRNA:   3'- -CGACC-GCaCGU-------UGGa-CGCGCU----------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 61467 0.66 0.549378
Target:  5'- uGCUcGCGUGCcACCUagucgaugucgccGCGC-AGGCGg -3'
miRNA:   3'- -CGAcCGCACGuUGGA-------------CGCGcUCCGCg -5'
19180 5' -59.3 NC_004684.1 + 40536 0.66 0.549378
Target:  5'- --cGGCGgugGCGACCUcCGCGAccuccaggagcugGGCGa -3'
miRNA:   3'- cgaCCGCa--CGUUGGAcGCGCU-------------CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.