miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 5' -59.3 NC_004684.1 + 28173 1.13 0.000251
Target:  5'- gGCUGGCGUGCAACCUGCGCGAGGCGCa -3'
miRNA:   3'- -CGACCGCACGUUGGACGCGCUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 7858 0.81 0.06313
Target:  5'- cGCUGGCgGUGCAggACCUGUGCGcAGGCc- -3'
miRNA:   3'- -CGACCG-CACGU--UGGACGCGC-UCCGcg -5'
19180 5' -59.3 NC_004684.1 + 1499 0.77 0.11565
Target:  5'- cCUGGUG-GcCAACCUGCGCGccGCGCu -3'
miRNA:   3'- cGACCGCaC-GUUGGACGCGCucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 37122 0.77 0.11565
Target:  5'- gGCUGGCGUGCcGCCaGCGCacuGCGCc -3'
miRNA:   3'- -CGACCGCACGuUGGaCGCGcucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 54299 0.76 0.13233
Target:  5'- gGC-GGCGUGC-ACC-GCGCGAaccggGGCGCa -3'
miRNA:   3'- -CGaCCGCACGuUGGaCGCGCU-----CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 6364 0.76 0.13233
Target:  5'- --cGGCG-GCGaugGCCUGCGCGuuGCGCa -3'
miRNA:   3'- cgaCCGCaCGU---UGGACGCGCucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 55645 0.76 0.135922
Target:  5'- gGCUGGCGUGCGuggaggaggGCCUG-GC--GGCGCa -3'
miRNA:   3'- -CGACCGCACGU---------UGGACgCGcuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 36692 0.76 0.143376
Target:  5'- cGUUGGCGUGCccACCgGCGUGAGcGUGUc -3'
miRNA:   3'- -CGACCGCACGu-UGGaCGCGCUC-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 52233 0.75 0.147242
Target:  5'- uGCgUGGCGgcgGCGGCCagcUGCGCGcuGGCGUg -3'
miRNA:   3'- -CG-ACCGCa--CGUUGG---ACGCGCu-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 63523 0.75 0.151203
Target:  5'- cCUGGCGUcGCAGCUcGCggGCGuGGCGCu -3'
miRNA:   3'- cGACCGCA-CGUUGGaCG--CGCuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 65438 0.75 0.151203
Target:  5'- cGCUGGCGUGCGGC--GCGCGGccaccGuGCGCc -3'
miRNA:   3'- -CGACCGCACGUUGgaCGCGCU-----C-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 46689 0.75 0.15526
Target:  5'- cGgUGGCgGUGCGGuggcgcgcCCUGUGCGAGcGCGCc -3'
miRNA:   3'- -CgACCG-CACGUU--------GGACGCGCUC-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 19745 0.75 0.159415
Target:  5'- cCUGgaGCGUGCAguACCUGCGCGGccugccGGUGCc -3'
miRNA:   3'- cGAC--CGCACGU--UGGACGCGCU------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 63144 0.74 0.172489
Target:  5'- uGgUGGCcgaGUGCGgcuCCUGCGCGccgcgcAGGCGCa -3'
miRNA:   3'- -CgACCG---CACGUu--GGACGCGC------UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 9893 0.74 0.177056
Target:  5'- --cGGCGcagGC-ACCUGCGUGcGGCGCu -3'
miRNA:   3'- cgaCCGCa--CGuUGGACGCGCuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 22990 0.74 0.186512
Target:  5'- aGgUGGcCGUGUcgAugCUGCGCGAGuuGCGCg -3'
miRNA:   3'- -CgACC-GCACG--UugGACGCGCUC--CGCG- -5'
19180 5' -59.3 NC_004684.1 + 5888 0.74 0.191405
Target:  5'- uGCUGGCGcGCAucgagcgccgccGCCUGCGCGgcgacaucgacuAGGUGg -3'
miRNA:   3'- -CGACCGCaCGU------------UGGACGCGC------------UCCGCg -5'
19180 5' -59.3 NC_004684.1 + 66883 0.74 0.19641
Target:  5'- cGCcGGUG-GCGACCUucgGCGCGGccuucGGCGCg -3'
miRNA:   3'- -CGaCCGCaCGUUGGA---CGCGCU-----CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 37534 0.73 0.201529
Target:  5'- aGCUGcGCGaugGUGACCgGCGCGuugGGGUGCa -3'
miRNA:   3'- -CGAC-CGCa--CGUUGGaCGCGC---UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 7336 0.73 0.217587
Target:  5'- uGCUcGGUGUGCAACCcGC-CGGuGCGCg -3'
miRNA:   3'- -CGA-CCGCACGUUGGaCGcGCUcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.