miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 5' -59.3 NC_004684.1 + 54623 0.66 0.54009
Target:  5'- cGUUGGCcgcaggcGCAGCC-GCGCGggccaagaGGGCGUc -3'
miRNA:   3'- -CGACCGca-----CGUUGGaCGCGC--------UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 57199 0.66 0.54009
Target:  5'- cCUGGaagGCGGCg-GCGCGAuGGUGCu -3'
miRNA:   3'- cGACCgcaCGUUGgaCGCGCU-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 27169 0.66 0.537005
Target:  5'- aGCUacGGCG-GCGACCUgGCcacggcgaucuuugGCGGcGGUGCg -3'
miRNA:   3'- -CGA--CCGCaCGUUGGA-CG--------------CGCU-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 49186 0.66 0.537005
Target:  5'- gGCggcGGCGgcgGCGGCCUGCuCGGucggccagucggucGGUGCc -3'
miRNA:   3'- -CGa--CCGCa--CGUUGGACGcGCU--------------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 55414 0.66 0.533927
Target:  5'- cGCUGGCGguggagaccacccaGCAGCgUGCGCc-GGUGg -3'
miRNA:   3'- -CGACCGCa-------------CGUUGgACGCGcuCCGCg -5'
19180 5' -59.3 NC_004684.1 + 8888 0.66 0.529833
Target:  5'- cGCUGGaccGCAGUCgGCGCGgcaagaagggcGGGCGCg -3'
miRNA:   3'- -CGACCgcaCGUUGGaCGCGC-----------UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 405 0.66 0.529833
Target:  5'- -gUGGCGgGCAAgCUGgGCGAcuGGCa- -3'
miRNA:   3'- cgACCGCaCGUUgGACgCGCU--CCGcg -5'
19180 5' -59.3 NC_004684.1 + 4226 0.66 0.529833
Target:  5'- aCU-GCaUGC-GCCUGCGCGGcGCGCa -3'
miRNA:   3'- cGAcCGcACGuUGGACGCGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 65998 0.66 0.529833
Target:  5'- cGCUGGCcaGUGCAACg-GCGgCcuuGGCGUc -3'
miRNA:   3'- -CGACCG--CACGUUGgaCGC-Gcu-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 45135 0.66 0.529833
Target:  5'- --aGGCGgucccaUGCucgcGCCUGCGCGuugaucgcgcGGGUGCc -3'
miRNA:   3'- cgaCCGC------ACGu---UGGACGCGC----------UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 51525 0.66 0.528811
Target:  5'- cGCUGGCG-GCcACgUGCuCGAugaccucGGCGUg -3'
miRNA:   3'- -CGACCGCaCGuUGgACGcGCU-------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 57203 0.66 0.519649
Target:  5'- cGCUGGCGcuggGCggUCUggaacuccucgaGCGCGGuGGCcaGCg -3'
miRNA:   3'- -CGACCGCa---CGuuGGA------------CGCGCU-CCG--CG- -5'
19180 5' -59.3 NC_004684.1 + 25974 0.66 0.519649
Target:  5'- aGCUGGUGcgcgaagGCAACCcgcugGCGCuccuGGCGg -3'
miRNA:   3'- -CGACCGCa------CGUUGGa----CGCGcu--CCGCg -5'
19180 5' -59.3 NC_004684.1 + 17264 0.66 0.519649
Target:  5'- cGCUGGUccUGCAA-CUGCuCGGcGGCGCu -3'
miRNA:   3'- -CGACCGc-ACGUUgGACGcGCU-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 29619 0.66 0.519649
Target:  5'- aGC-GGCGUGCAGCUgcacCGCGAuGGgaGCc -3'
miRNA:   3'- -CGaCCGCACGUUGGac--GCGCU-CCg-CG- -5'
19180 5' -59.3 NC_004684.1 + 23493 0.66 0.519649
Target:  5'- -aUGGcCGUGCucauccACCUGCccaGCGAugcgccgaacauGGCGCa -3'
miRNA:   3'- cgACC-GCACGu-----UGGACG---CGCU------------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 18747 0.66 0.519649
Target:  5'- --cGGCGcggUGCAgcgcaucuggGCCUGgGaaGAGGCGCa -3'
miRNA:   3'- cgaCCGC---ACGU----------UGGACgCg-CUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 27630 0.66 0.519649
Target:  5'- cGCgUGGUG-GCGcACCUcgGUGuCGAGGUGCc -3'
miRNA:   3'- -CG-ACCGCaCGU-UGGA--CGC-GCUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 7059 0.67 0.509542
Target:  5'- cGCUGGCGgugUGCAugaugACa-GCGCGGcauuguGGCGUa -3'
miRNA:   3'- -CGACCGC---ACGU-----UGgaCGCGCU------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 33884 0.67 0.509542
Target:  5'- --aGGCgGUGCGggcgguGCCgguggGCGCGgacagauauGGGCGCg -3'
miRNA:   3'- cgaCCG-CACGU------UGGa----CGCGC---------UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.