miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 5' -59.3 NC_004684.1 + 344 0.69 0.373629
Target:  5'- uGUUGGCGgGCAACCacacccugauggccaUGCGCGAccuGGC-Cg -3'
miRNA:   3'- -CGACCGCaCGUUGG---------------ACGCGCU---CCGcG- -5'
19180 5' -59.3 NC_004684.1 + 405 0.66 0.529833
Target:  5'- -gUGGCGgGCAAgCUGgGCGAcuGGCa- -3'
miRNA:   3'- cgACCGCaCGUUgGACgCGCU--CCGcg -5'
19180 5' -59.3 NC_004684.1 + 530 0.68 0.413804
Target:  5'- cGCUGaCGUGCuGGCCaGCGCggucGAGGcCGCc -3'
miRNA:   3'- -CGACcGCACG-UUGGaCGCG----CUCC-GCG- -5'
19180 5' -59.3 NC_004684.1 + 1080 0.69 0.361939
Target:  5'- cGCUGGaCGUGaucgguGACCagGcCGCGAcccGGCGCa -3'
miRNA:   3'- -CGACC-GCACg-----UUGGa-C-GCGCU---CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 1415 0.71 0.281856
Target:  5'- --gGGCG-GCugAGCCUGCGCGAcccgcuguccacgaaGGUGCa -3'
miRNA:   3'- cgaCCGCaCG--UUGGACGCGCU---------------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 1499 0.77 0.11565
Target:  5'- cCUGGUG-GcCAACCUGCGCGccGCGCu -3'
miRNA:   3'- cGACCGCaC-GUUGGACGCGCucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 1695 0.71 0.29582
Target:  5'- aGCUGGCGcGCAucgagcgcaagaagcGCCUGCu---GGCGCa -3'
miRNA:   3'- -CGACCGCaCGU---------------UGGACGcgcuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 2079 0.7 0.345684
Target:  5'- cGCUGGcCGUGguGCaca-GCGAGGcCGCc -3'
miRNA:   3'- -CGACC-GCACguUGgacgCGCUCC-GCG- -5'
19180 5' -59.3 NC_004684.1 + 2117 0.69 0.361939
Target:  5'- cGC-GGCGUgGUcggagcugGACCUGCGUGcguucGGCGCg -3'
miRNA:   3'- -CGaCCGCA-CG--------UUGGACGCGCu----CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 2538 0.7 0.32996
Target:  5'- cGCU-GCG-GC-ACCUGCGUGGaGCGCg -3'
miRNA:   3'- -CGAcCGCaCGuUGGACGCGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 4023 0.71 0.300113
Target:  5'- gGCUGGCGcGuCGGCCgcucgGUGCGcuGGGCGg -3'
miRNA:   3'- -CGACCGCaC-GUUGGa----CGCGC--UCCGCg -5'
19180 5' -59.3 NC_004684.1 + 4226 0.66 0.529833
Target:  5'- aCU-GCaUGC-GCCUGCGCGGcGCGCa -3'
miRNA:   3'- cGAcCGcACGuUGGACGCGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 4443 0.69 0.378718
Target:  5'- uGCUGGCGcaGCuggaGGCCgcacgugcGCGCGAGGcCGUc -3'
miRNA:   3'- -CGACCGCa-CG----UUGGa-------CGCGCUCC-GCG- -5'
19180 5' -59.3 NC_004684.1 + 5050 0.66 0.560795
Target:  5'- gGCUGGCGcGCG--CUGUGCugGAGGCc- -3'
miRNA:   3'- -CGACCGCaCGUugGACGCG--CUCCGcg -5'
19180 5' -59.3 NC_004684.1 + 5319 0.68 0.432081
Target:  5'- cGCUGGCGaccgUGCAGCa-GUGgGuGGCGg -3'
miRNA:   3'- -CGACCGC----ACGUUGgaCGCgCuCCGCg -5'
19180 5' -59.3 NC_004684.1 + 5534 0.71 0.29228
Target:  5'- aGCUGGUGgaugagGCgcagaacGugCUGCGCGAGGaCGa -3'
miRNA:   3'- -CGACCGCa-----CG-------UugGACGCGCUCC-GCg -5'
19180 5' -59.3 NC_004684.1 + 5771 0.66 0.560795
Target:  5'- cGgUGGgGcGCAGCgcgcuaCUGCGCcAGGCGUg -3'
miRNA:   3'- -CgACCgCaCGUUG------GACGCGcUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 5858 0.67 0.489584
Target:  5'- --aGGCGUGCGACUgGCagGCcGGGCaGCa -3'
miRNA:   3'- cgaCCGCACGUUGGaCG--CGcUCCG-CG- -5'
19180 5' -59.3 NC_004684.1 + 5888 0.74 0.191405
Target:  5'- uGCUGGCGcGCAucgagcgccgccGCCUGCGCGgcgacaucgacuAGGUGg -3'
miRNA:   3'- -CGACCGCaCGU------------UGGACGCGC------------UCCGCg -5'
19180 5' -59.3 NC_004684.1 + 6160 0.69 0.378718
Target:  5'- --cGGCG-GCGGCCaGCGUGcGGCGg -3'
miRNA:   3'- cgaCCGCaCGUUGGaCGCGCuCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.