miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 5' -59.3 NC_004684.1 + 46311 0.71 0.279127
Target:  5'- cGCuUGGCGUGC-GCCaGCGUcugGAGGCugGCg -3'
miRNA:   3'- -CG-ACCGCACGuUGGaCGCG---CUCCG--CG- -5'
19180 5' -59.3 NC_004684.1 + 14976 0.73 0.222613
Target:  5'- cGCUuGCGUGCAacgcagaACCUGCGCcu-GCGCg -3'
miRNA:   3'- -CGAcCGCACGU-------UGGACGCGcucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 23699 0.73 0.22889
Target:  5'- aGCgUGGCcucCAACCUGgGCGGcGGCGCg -3'
miRNA:   3'- -CG-ACCGcacGUUGGACgCGCU-CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 53077 0.72 0.234726
Target:  5'- cGCUGGUaccgGCGuacACCUGCGCGGcGGCcuGCa -3'
miRNA:   3'- -CGACCGca--CGU---UGGACGCGCU-CCG--CG- -5'
19180 5' -59.3 NC_004684.1 + 36123 0.72 0.246772
Target:  5'- uGCUGGCcuucGCcacACCUGUG-GGGGCGCa -3'
miRNA:   3'- -CGACCGca--CGu--UGGACGCgCUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 25688 0.72 0.252985
Target:  5'- --cGGCG-GCAAC--GCGCGuGGCGCa -3'
miRNA:   3'- cgaCCGCaCGUUGgaCGCGCuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 65757 0.72 0.252985
Target:  5'- cGCgGGCGUugGCcGCC-GCGCGccgguGGGCGCg -3'
miRNA:   3'- -CGaCCGCA--CGuUGGaCGCGC-----UCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 55195 0.72 0.259326
Target:  5'- cGCUGGCG-GCGGCgcuggaUGCcuaCGAGGCGUu -3'
miRNA:   3'- -CGACCGCaCGUUGg-----ACGc--GCUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 37060 0.71 0.279127
Target:  5'- uGCUGGCGcaGCAgaucGCCUGCcuguucGCGGuGCGCg -3'
miRNA:   3'- -CGACCGCa-CGU----UGGACG------CGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 52294 0.73 0.221488
Target:  5'- uGCUGGCacGUGCGaacacaucgcgcgcAgCUGCGCGGuGCGCa -3'
miRNA:   3'- -CGACCG--CACGU--------------UgGACGCGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 23737 0.73 0.217587
Target:  5'- cGCUGGCGgcGCAcuGCUcggUGCGCaguucgggccguGGGGCGCg -3'
miRNA:   3'- -CGACCGCa-CGU--UGG---ACGCG------------CUCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 7336 0.73 0.217587
Target:  5'- uGCUcGGUGUGCAACCcGC-CGGuGCGCg -3'
miRNA:   3'- -CGA-CCGCACGUUGGaCGcGCUcCGCG- -5'
19180 5' -59.3 NC_004684.1 + 37122 0.77 0.11565
Target:  5'- gGCUGGCGUGCcGCCaGCGCacuGCGCc -3'
miRNA:   3'- -CGACCGCACGuUGGaCGCGcucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 6364 0.76 0.13233
Target:  5'- --cGGCG-GCGaugGCCUGCGCGuuGCGCa -3'
miRNA:   3'- cgaCCGCaCGU---UGGACGCGCucCGCG- -5'
19180 5' -59.3 NC_004684.1 + 55645 0.76 0.135922
Target:  5'- gGCUGGCGUGCGuggaggaggGCCUG-GC--GGCGCa -3'
miRNA:   3'- -CGACCGCACGU---------UGGACgCGcuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 65438 0.75 0.151203
Target:  5'- cGCUGGCGUGCGGC--GCGCGGccaccGuGCGCc -3'
miRNA:   3'- -CGACCGCACGUUGgaCGCGCU-----C-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 63523 0.75 0.151203
Target:  5'- cCUGGCGUcGCAGCUcGCggGCGuGGCGCu -3'
miRNA:   3'- cGACCGCA-CGUUGGaCG--CGCuCCGCG- -5'
19180 5' -59.3 NC_004684.1 + 46689 0.75 0.15526
Target:  5'- cGgUGGCgGUGCGGuggcgcgcCCUGUGCGAGcGCGCc -3'
miRNA:   3'- -CgACCG-CACGUU--------GGACGCGCUC-CGCG- -5'
19180 5' -59.3 NC_004684.1 + 19745 0.75 0.159415
Target:  5'- cCUGgaGCGUGCAguACCUGCGCGGccugccGGUGCc -3'
miRNA:   3'- cGAC--CGCACGU--UGGACGCGCU------CCGCG- -5'
19180 5' -59.3 NC_004684.1 + 66883 0.74 0.19641
Target:  5'- cGCcGGUG-GCGACCUucgGCGCGGccuucGGCGCg -3'
miRNA:   3'- -CGaCCGCaCGUUGGA---CGCGCU-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.