miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19182 3' -60.3 NC_004684.1 + 53275 0.66 0.517034
Target:  5'- -uCAUCGGCucccACCcACCGGGGCugagccacaccACCCg -3'
miRNA:   3'- auGUGGCCG----UGGaUGGCCCUG-----------UGGGa -5'
19182 3' -60.3 NC_004684.1 + 65688 0.66 0.517034
Target:  5'- --gGCCGGUGCCUGCCaGGugcagguucGgGCCCg -3'
miRNA:   3'- augUGGCCGUGGAUGGcCC---------UgUGGGa -5'
19182 3' -60.3 NC_004684.1 + 25573 0.66 0.517034
Target:  5'- --gGCCaGCGCCU-CCGGGugGUCCa -3'
miRNA:   3'- augUGGcCGUGGAuGGCCCugUGGGa -5'
19182 3' -60.3 NC_004684.1 + 1903 0.66 0.506976
Target:  5'- aGCAuCCcGCACCUGCCGG---ACCCg -3'
miRNA:   3'- aUGU-GGcCGUGGAUGGCCcugUGGGa -5'
19182 3' -60.3 NC_004684.1 + 1082 0.66 0.506976
Target:  5'- aGCGCUacuacGCGCCgcUGCCGucGGGCACCCg -3'
miRNA:   3'- aUGUGGc----CGUGG--AUGGC--CCUGUGGGa -5'
19182 3' -60.3 NC_004684.1 + 54203 0.66 0.506976
Target:  5'- --aACCGGCgGCCUGCuCGGGGCcgaggucgGCCa- -3'
miRNA:   3'- augUGGCCG-UGGAUG-GCCCUG--------UGGga -5'
19182 3' -60.3 NC_004684.1 + 20891 0.66 0.504974
Target:  5'- -uCAUCGGCaagcuggccuccaacGCCUACCGcagcggcaagcgcguGGugGCCCUg -3'
miRNA:   3'- auGUGGCCG---------------UGGAUGGC---------------CCugUGGGA- -5'
19182 3' -60.3 NC_004684.1 + 19029 0.66 0.497002
Target:  5'- cACACCGGCAagcaCU-CCGaGAcCGCCCg -3'
miRNA:   3'- aUGUGGCCGUg---GAuGGCcCU-GUGGGa -5'
19182 3' -60.3 NC_004684.1 + 17859 0.66 0.497002
Target:  5'- -cCACCGcGCACaCcGCCGGGuGCACgCUg -3'
miRNA:   3'- auGUGGC-CGUG-GaUGGCCC-UGUGgGA- -5'
19182 3' -60.3 NC_004684.1 + 18300 0.66 0.497002
Target:  5'- -cCugUGGCACCUGCCGGuuGGCGgCg- -3'
miRNA:   3'- auGugGCCGUGGAUGGCC--CUGUgGga -5'
19182 3' -60.3 NC_004684.1 + 2958 0.66 0.497002
Target:  5'- -cCAUCGGCGCgCUGCuguugCGGGugGCCa- -3'
miRNA:   3'- auGUGGCCGUG-GAUG-----GCCCugUGGga -5'
19182 3' -60.3 NC_004684.1 + 47160 0.66 0.497002
Target:  5'- -gUACCGGCGC--GCCaGGcGCACCCa -3'
miRNA:   3'- auGUGGCCGUGgaUGGcCC-UGUGGGa -5'
19182 3' -60.3 NC_004684.1 + 28918 0.66 0.49601
Target:  5'- gACGCCGGUGCCUGCCuugucGGcgugaucGCGCCg- -3'
miRNA:   3'- aUGUGGCCGUGGAUGGc----CC-------UGUGGga -5'
19182 3' -60.3 NC_004684.1 + 15198 0.66 0.494028
Target:  5'- cGCAgCGGCaacaaacucaccacACC-GCUGGGACACCa- -3'
miRNA:   3'- aUGUgGCCG--------------UGGaUGGCCCUGUGGga -5'
19182 3' -60.3 NC_004684.1 + 18331 0.66 0.493038
Target:  5'- cACGCCGGUGCCgcccccggagccgACCGGcGGCGCg-- -3'
miRNA:   3'- aUGUGGCCGUGGa------------UGGCC-CUGUGgga -5'
19182 3' -60.3 NC_004684.1 + 25871 0.66 0.491061
Target:  5'- aGCugCGGUGCCaggGCCucguagcgggccauGGACACCCg -3'
miRNA:   3'- aUGugGCCGUGGa--UGGc-------------CCUGUGGGa -5'
19182 3' -60.3 NC_004684.1 + 54277 0.66 0.487118
Target:  5'- aGCGCCGcCACCcgGCCGGGgguGCGCgCa -3'
miRNA:   3'- aUGUGGCcGUGGa-UGGCCC---UGUGgGa -5'
19182 3' -60.3 NC_004684.1 + 59830 0.66 0.487118
Target:  5'- cGCACCaGCGCCacCCGGGGCcggUCCa -3'
miRNA:   3'- aUGUGGcCGUGGauGGCCCUGu--GGGa -5'
19182 3' -60.3 NC_004684.1 + 25165 0.66 0.486135
Target:  5'- cGCGCCGGUGCCgacACCGGcGGCcacgucgGCCa- -3'
miRNA:   3'- aUGUGGCCGUGGa--UGGCC-CUG-------UGGga -5'
19182 3' -60.3 NC_004684.1 + 24844 0.66 0.486135
Target:  5'- gGCAgCGGUagcGCC-ACCGGGccguucgGCACCCc -3'
miRNA:   3'- aUGUgGCCG---UGGaUGGCCC-------UGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.