miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19182 5' -56.5 NC_004684.1 + 8755 0.66 0.711297
Target:  5'- --cGGAUagagGCCCAGCgcgGCACCagCCGccACGg -3'
miRNA:   3'- ucuCCUA----UGGGUCGa--CGUGG--GGU--UGC- -5'
19182 5' -56.5 NC_004684.1 + 26554 0.66 0.711297
Target:  5'- cGGGGuGUACgcguuCCGGC-GCGCCCUGGCGc -3'
miRNA:   3'- uCUCC-UAUG-----GGUCGaCGUGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 64866 0.66 0.71024
Target:  5'- uGGGGGGUGCgcguuguCCGGUcGCGCCCC--CGg -3'
miRNA:   3'- -UCUCCUAUG-------GGUCGaCGUGGGGuuGC- -5'
19182 5' -56.5 NC_004684.1 + 55946 0.66 0.700686
Target:  5'- cGAGGccgACgCCGacGCcGCGCUCCAGCGg -3'
miRNA:   3'- uCUCCua-UG-GGU--CGaCGUGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 48367 0.66 0.683579
Target:  5'- cGGAGuGcUugCCGGUguggugcacgaucaGCACCCCGGCGu -3'
miRNA:   3'- -UCUC-CuAugGGUCGa-------------CGUGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 64200 0.66 0.679281
Target:  5'- uAGGGGGUgucGCaCCAGCuacacgacagguUGCAUCCCAucagGCGc -3'
miRNA:   3'- -UCUCCUA---UG-GGUCG------------ACGUGGGGU----UGC- -5'
19182 5' -56.5 NC_004684.1 + 23874 0.66 0.668508
Target:  5'- gGGAGGAggACCaCAacGCUGgucccgacCGCCCCGGCu -3'
miRNA:   3'- -UCUCCUa-UGG-GU--CGAC--------GUGGGGUUGc -5'
19182 5' -56.5 NC_004684.1 + 7390 0.66 0.668508
Target:  5'- uGGuGGAUGCgCCcGCUGCugCgguuCCGGCGc -3'
miRNA:   3'- -UCuCCUAUG-GGuCGACGugG----GGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 59220 0.66 0.668508
Target:  5'- ------gGCCCAGC-GCGcCCCCGGCGa -3'
miRNA:   3'- ucuccuaUGGGUCGaCGU-GGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 7237 0.66 0.668508
Target:  5'- uGGAGGuGUGCCCGG-UGCACCaggAGCa -3'
miRNA:   3'- -UCUCC-UAUGGGUCgACGUGGgg-UUGc -5'
19182 5' -56.5 NC_004684.1 + 22403 0.66 0.668508
Target:  5'- cGGcGGAUuccuaaccaGCCC-GCUGgGCCUCAACGc -3'
miRNA:   3'- -UCuCCUA---------UGGGuCGACgUGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 712 0.66 0.667428
Target:  5'- cGGuGGAcgGCCUGGC-GCuccaacuACCCCGACGa -3'
miRNA:   3'- -UCuCCUa-UGGGUCGaCG-------UGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 12638 0.67 0.651206
Target:  5'- cGAGGAacugACCCccgacgaugugcgcgAGCUGCGCUcgcugguggaggCCGACGa -3'
miRNA:   3'- uCUCCUa---UGGG---------------UCGACGUGG------------GGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 51838 0.67 0.646872
Target:  5'- uGGAGcAUcACCCAGUgcgcgaucuccUGCACCuCCAGCa -3'
miRNA:   3'- -UCUCcUA-UGGGUCG-----------ACGUGG-GGUUGc -5'
19182 5' -56.5 NC_004684.1 + 5465 0.67 0.636029
Target:  5'- cGGcGGGUGCCgUGGCccGCACCCC-GCGa -3'
miRNA:   3'- -UCuCCUAUGG-GUCGa-CGUGGGGuUGC- -5'
19182 5' -56.5 NC_004684.1 + 13442 0.67 0.614343
Target:  5'- uGuGcGGUGCUCAGCUGUGCCuggCCGACa -3'
miRNA:   3'- uCuC-CUAUGGGUCGACGUGG---GGUUGc -5'
19182 5' -56.5 NC_004684.1 + 53219 0.67 0.603518
Target:  5'- -cAGGGUGCCCAGCaccaccacgugGCACggguaggugauCCCGGCGc -3'
miRNA:   3'- ucUCCUAUGGGUCGa----------CGUG-----------GGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 66750 0.67 0.603518
Target:  5'- ------cACCCGGUacaGCACCCCGGCGa -3'
miRNA:   3'- ucuccuaUGGGUCGa--CGUGGGGUUGC- -5'
19182 5' -56.5 NC_004684.1 + 47057 0.67 0.603518
Target:  5'- cGGAGGccgacAUGCCCGGCccauugccaggGCACCagaaCGGCGg -3'
miRNA:   3'- -UCUCC-----UAUGGGUCGa----------CGUGGg---GUUGC- -5'
19182 5' -56.5 NC_004684.1 + 10256 0.67 0.602436
Target:  5'- uGGAGGcgAaCCAGCcGCGCCagugcugCCAGCGg -3'
miRNA:   3'- -UCUCCuaUgGGUCGaCGUGG-------GGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.