miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 42007 0.67 0.735832
Target:  5'- cGCUGuGC-GCGGCGGcguAGGCgcugACCGGGu -3'
miRNA:   3'- -CGGCuCGaUGUCGUCu--UCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15521 0.67 0.766389
Target:  5'- gGCCGAggccuuggagguGCUggaGguGCAGGAGaucgcGCACUGGGu -3'
miRNA:   3'- -CGGCU------------CGA---UguCGUCUUC-----UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 64939 0.67 0.72543
Target:  5'- cGCCGAGCUGgccgcccaGGCGGgcGAugucggccuuguCGCCGGu -3'
miRNA:   3'- -CGGCUCGAUg-------UCGUCuuCU------------GUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 53359 0.67 0.735832
Target:  5'- gGCCGGG-UACAGCAGGAcguuGACcgaGuuGGGc -3'
miRNA:   3'- -CGGCUCgAUGUCGUCUU----CUG---UggCCC- -5'
19183 3' -54.8 NC_004684.1 + 5666 0.67 0.766389
Target:  5'- uGCCucAGCcgUGGuCGGAGGugGCCGGGg -3'
miRNA:   3'- -CGGc-UCGauGUC-GUCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 21553 0.67 0.766389
Target:  5'- -aCGAGC-GCGGCAugaccgccGAGGccguCACCGGGu -3'
miRNA:   3'- cgGCUCGaUGUCGU--------CUUCu---GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6835 0.67 0.72543
Target:  5'- aGCUGGcCUACGGCgcgaaGGgcGACGCCGuGGu -3'
miRNA:   3'- -CGGCUcGAUGUCG-----UCuuCUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 24839 0.67 0.72543
Target:  5'- --aGGGCgGCAGCGGuAGcgcCACCGGGc -3'
miRNA:   3'- cggCUCGaUGUCGUCuUCu--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 9198 0.67 0.72543
Target:  5'- gGuuGGGC-GCAGUGGGcgcGugACCGGGu -3'
miRNA:   3'- -CggCUCGaUGUCGUCUu--CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47081 0.68 0.683031
Target:  5'- uGCCaGGGCaccagaACGGCGGugccGGGACGCgGGGg -3'
miRNA:   3'- -CGG-CUCGa-----UGUCGUC----UUCUGUGgCCC- -5'
19183 3' -54.8 NC_004684.1 + 15778 0.68 0.661506
Target:  5'- cGCCGAGC-GCGGCcaAGGAaCACCuGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGucUUCU-GUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 45593 0.68 0.692661
Target:  5'- cGCCGAccgucuuGCUGguGUAGGucGGGuCAUCGGGa -3'
miRNA:   3'- -CGGCU-------CGAUguCGUCU--UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 27848 0.68 0.714938
Target:  5'- aCCGAGCgcgcugUGCAcGCAGGAG-UGCCGGu -3'
miRNA:   3'- cGGCUCG------AUGU-CGUCUUCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 7633 0.68 0.714938
Target:  5'- aGCC-AGCUcGCcguGGCGGGcguGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGA-UG---UCGUCU---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43940 0.68 0.672287
Target:  5'- uGUCGGGCauggaggcCAGCAGAucGGccaccgugcgcaGCACCGGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUCU--UC------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 54221 0.68 0.704367
Target:  5'- gGCCGAGgUcggcCAGCAGcuGuuccagggcaccGCGCCGGGa -3'
miRNA:   3'- -CGGCUCgAu---GUCGUCuuC------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 35173 0.68 0.693728
Target:  5'- gGCCGAGCcggaaccgggugUGCAGUGGAacuGGGUGCCGGu -3'
miRNA:   3'- -CGGCUCG------------AUGUCGUCU---UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 4387 0.68 0.693728
Target:  5'- gGCCGAGCUGgucuaucgcgcCAGCaAGuccuGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGAU-----------GUCG-UCu---UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 53157 0.68 0.683031
Target:  5'- aCCGGGUc-CGGCGuGAAGGCcuCCGGGg -3'
miRNA:   3'- cGGCUCGauGUCGU-CUUCUGu-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 18846 0.69 0.636626
Target:  5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3'
miRNA:   3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.