miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 28802 0.71 0.501682
Target:  5'- uCCGAGCUGguGCucGAcgguGugACCGGGc -3'
miRNA:   3'- cGGCUCGAUguCGu-CUu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 6070 0.71 0.532724
Target:  5'- cGCCGcGCU--GGUAGccGAUGCCGGGg -3'
miRNA:   3'- -CGGCuCGAugUCGUCuuCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 64534 0.71 0.532724
Target:  5'- cGCCcAGCggcuCGGCGGccuuGGugACCGGGu -3'
miRNA:   3'- -CGGcUCGau--GUCGUCu---UCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 681 0.71 0.532724
Target:  5'- aCCGAGUUcgccgcGCAGCGcAAGACcgccGCCGGGu -3'
miRNA:   3'- cGGCUCGA------UGUCGUcUUCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 57878 0.71 0.501682
Target:  5'- gGUCGgaAGCUggcGCAGCucguacGGGAGugACCGGGu -3'
miRNA:   3'- -CGGC--UCGA---UGUCG------UCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58765 0.71 0.501682
Target:  5'- uGCCGAGgauCGGCGGugccGGuGCACCGGGc -3'
miRNA:   3'- -CGGCUCgauGUCGUCu---UC-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 22868 0.71 0.501682
Target:  5'- uCCGGGCcaccACGGCGGccAAGACGCUGGa -3'
miRNA:   3'- cGGCUCGa---UGUCGUC--UUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 63931 0.71 0.532724
Target:  5'- gGCUGAGCUugGGCgAGAcGGcgaACACCGuGGu -3'
miRNA:   3'- -CGGCUCGAugUCG-UCU-UC---UGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 7785 0.71 0.532724
Target:  5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3'
miRNA:   3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43863 0.71 0.532724
Target:  5'- cGCCGAGgUugGugaGCAGGcugguGACGCCGGa -3'
miRNA:   3'- -CGGCUCgAugU---CGUCUu----CUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 62806 0.72 0.451831
Target:  5'- uGCCGGGCagGCGGgGGAgcuuucAGGCcgACCGGGu -3'
miRNA:   3'- -CGGCUCGa-UGUCgUCU------UCUG--UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 65805 0.72 0.451831
Target:  5'- uGCCGuGCaccggGCAGguGAcccggAGGCACCGGcGg -3'
miRNA:   3'- -CGGCuCGa----UGUCguCU-----UCUGUGGCC-C- -5'
19183 3' -54.8 NC_004684.1 + 35416 0.72 0.432659
Target:  5'- cGCCGAGgaGC-GCGGGAGGCgauggucccGCCGGa -3'
miRNA:   3'- -CGGCUCgaUGuCGUCUUCUG---------UGGCCc -5'
19183 3' -54.8 NC_004684.1 + 9914 0.72 0.442186
Target:  5'- uCCGGGCUGaccgaGGCGGugauuGugGCCGGGc -3'
miRNA:   3'- cGGCUCGAUg----UCGUCuu---CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 31870 0.72 0.46159
Target:  5'- -gCGAGCUGCccGCcGAcgugcugguGGACGCCGGGa -3'
miRNA:   3'- cgGCUCGAUGu-CGuCU---------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 27719 0.72 0.471459
Target:  5'- gGCCGAGCgcgAGCAcGAGGCACgCGGa -3'
miRNA:   3'- -CGGCUCGaugUCGUcUUCUGUG-GCCc -5'
19183 3' -54.8 NC_004684.1 + 32270 0.72 0.481433
Target:  5'- aGCCGAGCUgGCuGUugaaguaaccGGAGGugACCGGc -3'
miRNA:   3'- -CGGCUCGA-UGuCG----------UCUUCugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 41096 0.72 0.46159
Target:  5'- gGCCGAGCUGCguaccgauGGCcGAGGuCACCGa- -3'
miRNA:   3'- -CGGCUCGAUG--------UCGuCUUCuGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 6477 0.73 0.423252
Target:  5'- aGCUGGGCgGCGGUGGuguucGACAUCGGGu -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuu---CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 48945 0.73 0.386888
Target:  5'- cGCCGAacgGCacguCGGCGGGcggGGugGCCGGGg -3'
miRNA:   3'- -CGGCU---CGau--GUCGUCU---UCugUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.