miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 12968 0.69 0.607401
Target:  5'- cGCCGAcCgGCGGCAGGcaacaccgAG-CGCCGGGc -3'
miRNA:   3'- -CGGCUcGaUGUCGUCU--------UCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 63726 0.69 0.618217
Target:  5'- uGCCGGGCcACcGUAcGAugacccGGCACCGGGc -3'
miRNA:   3'- -CGGCUCGaUGuCGU-CUu-----CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 29819 0.69 0.618217
Target:  5'- uGCCGGGCaccucCAGCucccGGuACACCGGGu -3'
miRNA:   3'- -CGGCUCGau---GUCGucu-UC-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 15154 0.69 0.629045
Target:  5'- cGCCGcuguGGCaccACGGCcuGAucGACGCCGGGg -3'
miRNA:   3'- -CGGC----UCGa--UGUCGu-CUu-CUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 36102 0.69 0.629045
Target:  5'- aCCGAGgUACGGCGGuAGcCGCCGa- -3'
miRNA:   3'- cGGCUCgAUGUCGUCuUCuGUGGCcc -5'
19183 3' -54.8 NC_004684.1 + 24581 0.69 0.630128
Target:  5'- uGCCGGGCgagcacguccugacgACAGCGGAcguGGCGCgcaUGGGc -3'
miRNA:   3'- -CGGCUCGa--------------UGUCGUCUu--CUGUG---GCCC- -5'
19183 3' -54.8 NC_004684.1 + 26988 0.69 0.633377
Target:  5'- gGCCGGuGCgagcGCGGCGGgcGcggcgaucaacagccAGGCACCGGGu -3'
miRNA:   3'- -CGGCU-CGa---UGUCGUC--U---------------UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 18846 0.69 0.636626
Target:  5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3'
miRNA:   3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 53736 0.69 0.639875
Target:  5'- uGCCGGGUUcgACGGcCAGGA-ACACCGaGGu -3'
miRNA:   3'- -CGGCUCGA--UGUC-GUCUUcUGUGGC-CC- -5'
19183 3' -54.8 NC_004684.1 + 18345 0.69 0.639875
Target:  5'- gGCCGAGcCUGCcgAGgAGGAGgagccuGCGCCGGu -3'
miRNA:   3'- -CGGCUC-GAUG--UCgUCUUC------UGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 42948 0.69 0.650699
Target:  5'- cGCUuguGGCUGCuGUGGuuGugGCCGGGg -3'
miRNA:   3'- -CGGc--UCGAUGuCGUCuuCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 11455 0.69 0.650699
Target:  5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3'
miRNA:   3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 19605 0.69 0.650699
Target:  5'- gGCCGAGgUGCuGGCGGu-GACGCuCGGc -3'
miRNA:   3'- -CGGCUCgAUG-UCGUCuuCUGUG-GCCc -5'
19183 3' -54.8 NC_004684.1 + 22733 0.69 0.650699
Target:  5'- cGCCGccGCaGCAGCGGguGACGCaguGGGc -3'
miRNA:   3'- -CGGCu-CGaUGUCGUCuuCUGUGg--CCC- -5'
19183 3' -54.8 NC_004684.1 + 15778 0.68 0.661506
Target:  5'- cGCCGAGC-GCGGCcaAGGAaCACCuGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGucUUCU-GUGGcCC- -5'
19183 3' -54.8 NC_004684.1 + 43940 0.68 0.672287
Target:  5'- uGUCGGGCauggaggcCAGCAGAucGGccaccgugcgcaGCACCGGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUCU--UC------------UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47081 0.68 0.683031
Target:  5'- uGCCaGGGCaccagaACGGCGGugccGGGACGCgGGGg -3'
miRNA:   3'- -CGG-CUCGa-----UGUCGUC----UUCUGUGgCCC- -5'
19183 3' -54.8 NC_004684.1 + 53157 0.68 0.683031
Target:  5'- aCCGGGUc-CGGCGuGAAGGCcuCCGGGg -3'
miRNA:   3'- cGGCUCGauGUCGU-CUUCUGu-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 45593 0.68 0.692661
Target:  5'- cGCCGAccgucuuGCUGguGUAGGucGGGuCAUCGGGa -3'
miRNA:   3'- -CGGCU-------CGAUguCGUCU--UCU-GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 4387 0.68 0.693728
Target:  5'- gGCCGAGCUGgucuaucgcgcCAGCaAGuccuGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGAU-----------GUCG-UCu---UCuGUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.