Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 19605 | 0.69 | 0.650699 |
Target: 5'- gGCCGAGgUGCuGGCGGu-GACGCuCGGc -3' miRNA: 3'- -CGGCUCgAUG-UCGUCuuCUGUG-GCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 42948 | 0.69 | 0.650699 |
Target: 5'- cGCUuguGGCUGCuGUGGuuGugGCCGGGg -3' miRNA: 3'- -CGGc--UCGAUGuCGUCuuCugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 11455 | 0.69 | 0.650699 |
Target: 5'- gGCCGAcGCgcaccACGGUcaccGAGGACGgCCGGGu -3' miRNA: 3'- -CGGCU-CGa----UGUCGu---CUUCUGU-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 18345 | 0.69 | 0.639875 |
Target: 5'- gGCCGAGcCUGCcgAGgAGGAGgagccuGCGCCGGu -3' miRNA: 3'- -CGGCUC-GAUG--UCgUCUUC------UGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 53736 | 0.69 | 0.639875 |
Target: 5'- uGCCGGGUUcgACGGcCAGGA-ACACCGaGGu -3' miRNA: 3'- -CGGCUCGA--UGUC-GUCUUcUGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 18846 | 0.69 | 0.636626 |
Target: 5'- gGCCGAGgUGuggcaggagguCGGCAacuacaucauccgcGAGGGCAUCGGGu -3' miRNA: 3'- -CGGCUCgAU-----------GUCGU--------------CUUCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 26988 | 0.69 | 0.633377 |
Target: 5'- gGCCGGuGCgagcGCGGCGGgcGcggcgaucaacagccAGGCACCGGGu -3' miRNA: 3'- -CGGCU-CGa---UGUCGUC--U---------------UCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24581 | 0.69 | 0.630128 |
Target: 5'- uGCCGGGCgagcacguccugacgACAGCGGAcguGGCGCgcaUGGGc -3' miRNA: 3'- -CGGCUCGa--------------UGUCGUCUu--CUGUG---GCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15154 | 0.69 | 0.629045 |
Target: 5'- cGCCGcuguGGCaccACGGCcuGAucGACGCCGGGg -3' miRNA: 3'- -CGGC----UCGa--UGUCGu-CUu-CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 36102 | 0.69 | 0.629045 |
Target: 5'- aCCGAGgUACGGCGGuAGcCGCCGa- -3' miRNA: 3'- cGGCUCgAUGUCGUCuUCuGUGGCcc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 63726 | 0.69 | 0.618217 |
Target: 5'- uGCCGGGCcACcGUAcGAugacccGGCACCGGGc -3' miRNA: 3'- -CGGCUCGaUGuCGU-CUu-----CUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 29819 | 0.69 | 0.618217 |
Target: 5'- uGCCGGGCaccucCAGCucccGGuACACCGGGu -3' miRNA: 3'- -CGGCUCGau---GUCGucu-UC-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 12968 | 0.69 | 0.607401 |
Target: 5'- cGCCGAcCgGCGGCAGGcaacaccgAG-CGCCGGGc -3' miRNA: 3'- -CGGCUcGaUGUCGUCU--------UCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 8970 | 0.7 | 0.585839 |
Target: 5'- gGCCGgaGGCaACGGCGGGGuuccGGCGgCCGGGc -3' miRNA: 3'- -CGGC--UCGaUGUCGUCUU----CUGU-GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 32190 | 0.7 | 0.585839 |
Target: 5'- cGCCGucGUUcCAGCAGAucGGCAcguCCGGGa -3' miRNA: 3'- -CGGCu-CGAuGUCGUCUu-CUGU---GGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 30633 | 0.7 | 0.575111 |
Target: 5'- aCCGGGCgcggcccugGCGGCGucAG-CGCCGGGa -3' miRNA: 3'- cGGCUCGa--------UGUCGUcuUCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 45460 | 0.7 | 0.564427 |
Target: 5'- cGCCGAGgUugaugcuccCGGCGGuGGuCACCGGGc -3' miRNA: 3'- -CGGCUCgAu--------GUCGUCuUCuGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 28081 | 0.7 | 0.564427 |
Target: 5'- gGCCGGGCcGCcGCGcGAcccGCACCGGGu -3' miRNA: 3'- -CGGCUCGaUGuCGU-CUuc-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 15900 | 0.7 | 0.553797 |
Target: 5'- aGCCGcagGGCguccCGGCAGAGGccuacccgGCACCGGa -3' miRNA: 3'- -CGGC---UCGau--GUCGUCUUC--------UGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 7785 | 0.71 | 0.532724 |
Target: 5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3' miRNA: 3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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