Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19183 | 3' | -54.8 | NC_004684.1 | + | 20230 | 0.76 | 0.276716 |
Target: 5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3' miRNA: 3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 20546 | 0.66 | 0.795743 |
Target: 5'- gGCCaGGCauucgucCAGCuauAGGAGGCACCGuGGa -3' miRNA: 3'- -CGGcUCGau-----GUCG---UCUUCUGUGGC-CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 21553 | 0.67 | 0.766389 |
Target: 5'- -aCGAGC-GCGGCAugaccgccGAGGccguCACCGGGu -3' miRNA: 3'- cgGCUCGaUGUCGU--------CUUCu---GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 22733 | 0.69 | 0.650699 |
Target: 5'- cGCCGccGCaGCAGCGGguGACGCaguGGGc -3' miRNA: 3'- -CGGCu-CGaUGUCGUCuuCUGUGg--CCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 22868 | 0.71 | 0.501682 |
Target: 5'- uCCGGGCcaccACGGCGGccAAGACGCUGGa -3' miRNA: 3'- cGGCUCGa---UGUCGUC--UUCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24581 | 0.69 | 0.630128 |
Target: 5'- uGCCGGGCgagcacguccugacgACAGCGGAcguGGCGCgcaUGGGc -3' miRNA: 3'- -CGGCUCGa--------------UGUCGUCUu--CUGUG---GCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24772 | 0.73 | 0.386888 |
Target: 5'- aCCG-GCgGCGGCGGggGAggUGCCGGGu -3' miRNA: 3'- cGGCuCGaUGUCGUCuuCU--GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 24839 | 0.67 | 0.72543 |
Target: 5'- --aGGGCgGCAGCGGuAGcgcCACCGGGc -3' miRNA: 3'- cggCUCGaUGUCGUCuUCu--GUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 25816 | 0.73 | 0.395785 |
Target: 5'- gGCCGGGUgGCGGcCAGAAcGGCAUCGGcGg -3' miRNA: 3'- -CGGCUCGaUGUC-GUCUU-CUGUGGCC-C- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 25936 | 0.67 | 0.756322 |
Target: 5'- cGCCGGGgU-CAGCccacuGACACCGGcGg -3' miRNA: 3'- -CGGCUCgAuGUCGucuu-CUGUGGCC-C- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 26853 | 0.66 | 0.776321 |
Target: 5'- gGUCGAGCaccaGCgAGCAGGAGGCGgCGcaGGa -3' miRNA: 3'- -CGGCUCGa---UG-UCGUCUUCUGUgGC--CC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 26929 | 0.66 | 0.776321 |
Target: 5'- cGCCGAGacccccgaGCAGCGGccgccuGGGCACCGc- -3' miRNA: 3'- -CGGCUCga------UGUCGUCu-----UCUGUGGCcc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 26988 | 0.69 | 0.633377 |
Target: 5'- gGCCGGuGCgagcGCGGCGGgcGcggcgaucaacagccAGGCACCGGGu -3' miRNA: 3'- -CGGCU-CGa---UGUCGUC--U---------------UCUGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 27324 | 0.66 | 0.776321 |
Target: 5'- gGCC-AGCUuugacgACGGCGGuaucgccguGGGCACCGGc -3' miRNA: 3'- -CGGcUCGA------UGUCGUCu--------UCUGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 27719 | 0.72 | 0.471459 |
Target: 5'- gGCCGAGCgcgAGCAcGAGGCACgCGGa -3' miRNA: 3'- -CGGCUCGaugUCGUcUUCUGUG-GCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 27848 | 0.68 | 0.714938 |
Target: 5'- aCCGAGCgcgcugUGCAcGCAGGAG-UGCCGGu -3' miRNA: 3'- cGGCUCG------AUGU-CGUCUUCuGUGGCCc -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 28081 | 0.7 | 0.564427 |
Target: 5'- gGCCGGGCcGCcGCGcGAcccGCACCGGGu -3' miRNA: 3'- -CGGCUCGaUGuCGU-CUuc-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 28802 | 0.71 | 0.501682 |
Target: 5'- uCCGAGCUGguGCucGAcgguGugACCGGGc -3' miRNA: 3'- cGGCUCGAUguCGu-CUu---CugUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 29819 | 0.69 | 0.618217 |
Target: 5'- uGCCGGGCaccucCAGCucccGGuACACCGGGu -3' miRNA: 3'- -CGGCUCGau---GUCGucu-UC-UGUGGCCC- -5' |
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19183 | 3' | -54.8 | NC_004684.1 | + | 30022 | 1.13 | 0.000798 |
Target: 5'- gGCCGAGCUACAGCAGAAGACACCGGGg -3' miRNA: 3'- -CGGCUCGAUGUCGUCUUCUGUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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